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Source: unicycler
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Liubov Chuprikova <chuprikovalv@gmail.com>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-setuptools,
default-jdk <!nocheck>,
bcftools,
bowtie2 <!nocheck>,
miniasm,
ncbi-blast+ <!nocheck>,
pilon <!nocheck>,
racon,
samtools <!nocheck>,
spades (>= 3.14),
libseqan2-dev,
zlib1g-dev
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/unicycler
Vcs-Git: https://salsa.debian.org/med-team/unicycler.git
Homepage: https://github.com/rrwick/Unicycler
Rules-Requires-Root: no
Package: unicycler
Architecture: any
Depends: ${python3:Depends},
${shlibs:Depends},
${misc:Depends},
default-jre,
bcftools,
bowtie2,
miniasm,
ncbi-blast+,
pilon,
racon,
samtools,
spades (>= 3.14)
Recommends: unicycler-data
Description: hybrid assembly pipeline for bacterial genomes
Unicycler is an assembly pipeline for bacterial genomes. It can assemble
Illumina-only read sets where it functions as a SPAdes-optimiser. It can
also assembly long-read-only sets (PacBio or Nanopore) where it runs a
miniasm+Racon pipeline. For the best possible assemblies, give it both
Illumina reads and long reads, and it will conduct a hybrid assembly.
Package: unicycler-data
Architecture: all
Multi-Arch: foreign
Depends: ${misc:Depends}
Description: hybrid assembly pipeline for bacterial genomes (data package)
Unicycler is an assembly pipeline for bacterial genomes. It can assemble
Illumina-only read sets where it functions as a SPAdes-optimiser. It can
also assembly long-read-only sets (PacBio or Nanopore) where it runs a
miniasm+Racon pipeline. For the best possible assemblies, give it both
Illumina reads and long reads, and it will conduct a hybrid assembly.
.
This package contains architecture independent data for unicycler.
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