File: README.md

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vcfanno 0.3.2%2Bds-2
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# Timing table (downloads data for other plots too)
python timing.py # writes timing.txt which is the table.

# Figure 4. (number of cores vs speedup for ExAC and 1KG)
bash parallelization-run.sh
python parallelization-figure.py

# Figure 5A. (gap-size vs chunk-size)
python chunk-gap-plot.py  1kg.times-tails.fmt.txt exac.times-tails.txt

# Supplemental File 1 is `gem.conf`

# Supplemental Table 1 is `par-times.txt`

# Supplemental File 2 is `afci.lua`