1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
|
#!/usr/bin/make -f
%:
dh $@ --buildsystem=golang --with=golang
override_dh_auto_install:
dh_auto_install -- --no-source
override_dh_installdocs:
# Regenerate bam and bam index file
cat debian/missing-sources/ex.sam| samtools view -Sb - > example/ex.bam
samtools index example/ex.bam example/ex.bam.bai
# Remove corrupt gz file
rm -rf tests/notbgz/notbgz.vcf.gz
# Regenerate all .tbi files
tabix example/exac.vcf.gz
tabix example/fitcons.bed.gz
tabix tests/astar/astar.anno.vcf.gz
tabix tests/by_alt_float/annotation.tsv.gz
tabix tests/citest/at/testexon.bed.gz
tabix tests/citest/dummyexons.bed.gz
tabix tests/data/multiple-alts.vcf.gz
tabix tests/data/number.vcf.gz
tabix tests/dbnsfp/dbNSFP_example.txt.gz
tabix tests/dbnsfp/dbNSFP_ex.txt.gz
tabix tests/id-test/cosmic.small.vcf.gz
tabix tests/id-test/dbsnp.small.vcf.gz
tabix tests/id-test/small.vcf.gz
tabix tests/multiple-alts/ma-db.vcf.gz
tabix tests/notbgz/gno.vcf.gz
tabix tests/overwrite-multiple-alts/a/whole.vcf.gz
tabix tests/overwrite-multiple-alts/b/cadd_indels.vcf.gz
tabix tests/overwrite-multiple-alts/b/whole_genome_snv_slice.vcf.gz
tabix tests/ref-alt-test/tmp_annotation.txt.gz
tabix tests/ref-alt-test/tmp_calls.vcf.gz
tabix tests/testVA/test-gnomad.vcf.gz
tabix docs/examples/gff_sv/genes.gff3.gz
dh_installdocs
|
