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/*
entry_setters.cpp
*
* Created on: Nov 11, 2009
* Author: Adam Auton
* ($Revision: 230 $)
*/
#include "entry.h"
void entry::add_ALT_allele(const string &in)
{
if (in != ".")
{
if (find(ALT.begin(), ALT.end(),in) == ALT.end())
{
ALT.push_back(in);
}
else
{
LOG.warning(" Duplicate alternate alleles found at " + CHROM + ":" + LOG.int2str(POS));
ALT.push_back(in);
}
}
parsed_ALT = true;
}
void entry::set_indv_DEPTH(unsigned int indv, int in)
{
parsed_DP[indv] = true;
if (in == -1)
{
if (!DEPTH.empty())
DEPTH[indv] = -1;
return;
}
if (DEPTH.empty())
DEPTH.resize(N_indv, -1);
DEPTH[indv] = in;
}
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