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# -*- Autoconf -*-
# Process this file with autoconf to produce a configure script.
AC_PREREQ([2.63])
AC_INIT([vcftools],
[m4_esyscmd([build-aux/git-version-gen .tarball-version])],
[https://github.com/vcftools/vcftools/issues])
AC_CONFIG_SRCDIR([src/cpp/vcftools.cpp])
AC_CONFIG_HEADERS([config.h])
# Automake invocation.
AM_INIT_AUTOMAKE([foreign])
# Checks for programs.
AC_PROG_CXX
AC_PROG_CC
AC_PROG_CPP
# Checks for perl.
AC_PATH_PROGS([PERL], [perl] [perl5], [false])
AS_IF([test "x$PERL" = "xfalse"],[
AC_MSG_ERROR([Perl not found; check your \$PATH.])
])
pmdir_relative_path=`\
$PERL -MConfig \
-wle '($_ = $Config{installsitelib})
=~ s!^\Q$Config{siteprefix}/!!; \
print'`
AC_ARG_WITH(
[pmdir],
AS_HELP_STRING(
[--with-pmdir=DIR],
[install Perl modules in DIR]),
[PMDIR=${withval}],
[PMDIR="$pmdir_relative_path"])
AC_SUBST([PMDIR])
# Checks for libraries.
PKG_CHECK_MODULES([ZLIB], [zlib])
# Checks for header files.
AC_CHECK_HEADERS([arpa/inet.h fcntl.h limits.h netdb.h stdint.h stdlib.h string.h sys/socket.h unistd.h])
# Checks for typedefs, structures, and compiler characteristics.
AC_HEADER_STDBOOL
AC_C_INLINE
AC_TYPE_INT16_T
AC_TYPE_INT32_T
AC_TYPE_INT64_T
AC_TYPE_INT8_T
AC_TYPE_OFF_T
AC_TYPE_SIZE_T
AC_TYPE_SSIZE_T
AC_TYPE_UINT16_T
AC_TYPE_UINT32_T
AC_TYPE_UINT8_T
# Checks for operating system services or capabilities.
AC_SYS_LARGEFILE
# Checks for library functions.
AC_FUNC_ERROR_AT_LINE
AC_CHECK_FUNCS([gethostbyaddr gethostbyname malloc memset pow realloc select socket sqrt strchr strdup strerror strstr strtol])
# Optional features.
AC_ARG_ENABLE([pca],
AS_HELP_STRING([--enable-pca], [enable PCA feature]),
[pca=${enableval}],
[pca=no])
AS_IF([test "x$pca" = "xyes"],[
AC_CHECK_LIB([lapack], [dgeev_])
])
# Generate output.
AC_CONFIG_FILES([Makefile
src/Makefile
src/cpp/Makefile
src/perl/Makefile])
AC_OUTPUT
|
