1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22
|
"""Visualize a n:dotm numpy matrix"""
from vedo.pyplot import matrix
from vedo import show
import numpy as np
n, m = (6, 5)
M = np.eye(n, m)/2 + np.random.randn(n, m)*0.1
# print(M)
mat = matrix(
M,
cmap='Reds',
title='My numpy Matrix',
xtitle='Genes of group A',
ytitle='Genes of group B',
xlabels=[f'hox{i}' for i in range(m)],
ylabels=[f'bmp{i}' for i in range(n)],
scale=0.15, # size of bin labels; set it to 0 to remove labels
lw=2, # separator line width
)
show(mat, __doc__, bg='k7', zoom=1.2).close()
|