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|
[submodule "vcflib"]
path = deps/vcflib
url = https://github.com/vcflib/vcflib.git
[submodule "fastahack"]
path = deps/fastahack
url = https://github.com/vgteam/fastahack.git
[submodule "gssw"]
path = deps/gssw
url = https://github.com/vgteam/gssw.git
[submodule "bash-tap"]
path = deps/bash-tap
url = https://github.com/illusori/bash-tap.git
[submodule "progress_bar"]
path = deps/progress_bar
url = https://github.com/vgteam/cpp_progress_bar.git
[submodule "lru_cache"]
path = deps/lru_cache
url = https://github.com/ekg/lru_cache.git
[submodule "sha1"]
path = deps/sha1
url = https://github.com/vog/sha1.git
[submodule "gcsa2"]
path = deps/gcsa2
url = https://github.com/jltsiren/gcsa2.git
[submodule "sdsl-lite"]
path = deps/sdsl-lite
url = https://github.com/simongog/sdsl-lite
[submodule "deps/libVCFH"]
path = deps/libVCFH
url = https://github.com/edawson/libVCFH.git
[submodule "deps/sparsehash"]
path = deps/sparsehash
url = https://github.com/sparsehash/sparsehash.git
[submodule "gfakluge"]
path = deps/gfakluge
url = https://github.com/vgteam/gfakluge.git
[submodule "deps/DYNAMIC"]
path = deps/DYNAMIC
url = https://github.com/vgteam/DYNAMIC
[submodule "deps/raptor"]
path = deps/raptor
url = https://github.com/vgteam/raptor.git
[submodule "deps/snappy"]
path = deps/snappy
url = https://github.com/google/snappy.git
[submodule "deps/Complete-Striped-Smith-Waterman-Library"]
path = deps/ssw
url = https://github.com/vgteam/Complete-Striped-Smith-Waterman-Library.git
[submodule "deps/pinchesAndCacti"]
path = deps/pinchesAndCacti
url = https://github.com/benedictpaten/pinchesAndCacti.git
[submodule "deps/sonLib"]
path = deps/sonLib
url = https://github.com/benedictpaten/sonLib.git
[submodule "deps/fermi-lite"]
path = deps/fermi-lite
url = https://github.com/edawson/fermi-lite.git
[submodule "deps/gbwt"]
path = deps/gbwt
url = https://github.com/jltsiren/gbwt.git
[submodule "deps/sublinear-Li-Stephens"]
path = deps/sublinear-Li-Stephens
url = https://github.com/yoheirosen/sublinear-Li-Stephens.git
[submodule "deps/backward-cpp"]
path = deps/backward-cpp
url = https://github.com/adamnovak/backward-cpp.git
[submodule "deps/elfutils"]
path = deps/elfutils
url = git://sourceware.org/git/elfutils.git
[submodule "deps/structures"]
path = deps/structures
url = https://github.com/vgteam/structures.git
[submodule "deps/sparsepp"]
path = deps/sparsepp
url = https://github.com/greg7mdp/sparsepp.git
[submodule "deps/vowpal_wabbit"]
path = deps/vowpal_wabbit
url = https://github.com/vgteam/vowpal_wabbit.git
[submodule "deps/libdeflate"]
path = deps/libdeflate
url = https://github.com/ebiggers/libdeflate.git
[submodule "deps/dozeu"]
path = deps/dozeu
url = https://github.com/ocxtal/dozeu.git
[submodule "deps/libhandlegraph"]
path = deps/libhandlegraph
url = https://github.com/vgteam/libhandlegraph.git
[submodule "deps/libvgio"]
path = deps/libvgio
url = https://github.com/vgteam/libvgio.git
[submodule "deps/jemalloc"]
path = deps/jemalloc
url = https://github.com/jemalloc/jemalloc.git
[submodule "deps/sglib"]
path = deps/sglib
url = https://github.com/vgteam/sglib.git
branch = master
[submodule "deps/FlameGraph"]
path = deps/FlameGraph
url = https://github.com/brendangregg/FlameGraph
[submodule "deps/libbdsg"]
path = deps/libbdsg
url = https://github.com/vgteam/libbdsg.git
[submodule "deps/xg"]
path = deps/xg
url = https://github.com/vgteam/xg.git
[submodule "deps/gbwtgraph"]
path = deps/gbwtgraph
url = https://github.com/jltsiren/gbwtgraph.git
[submodule "deps/ips4o"]
path = deps/ips4o
url = https://github.com/vgteam/ips4o.git
[submodule "deps/mmmultimap"]
path = deps/mmmultimap
url = https://github.com/ekg/mmmultimap.git
[submodule "vgteam_bbhash"]
path = deps/BBHash
url = https://github.com/vgteam/BBHash.git
[submodule "doc/wiki"]
path = doc/wiki
url = https://github.com/vgteam/vg.wiki.git
|
