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bin/shuf
debian/help/vg
deps/DYNAMIC/build/*
deps/gbwt/*.d
deps/gbwtgraph/*.d
deps/gcsa2/*.d
deps/gssw/bin/
deps/gssw/obj/
deps/libbdsg/bdsg/obj/
deps/libbdsg/lib/*.a
deps/libhandlegraph/*.a
deps/libhandlegraph/CMakeCache.txt
deps/libhandlegraph/CMakeFiles/
deps/libhandlegraph/cmake_install.cmake
deps/libhandlegraph/Makefile
deps/libhandlegraph/*.so
deps/libvgio/CMakeFiles/
deps/libvgio/vg/
deps/progress_bar/*.d
deps/sdsl-lite/lib/structure_tree.cpp
deps/sdsl-lite/Make.helper
deps/sdsl-lite/test/compile_test.cpp
deps/sonLib/C/*.d
deps/sonLib/externalTools/quicktree_1.1/bin/*
deps/sublinear-Li-Stephens/lib/
deps/sublinear-Li-Stephens/obj/
deps/vowpal_wabbit/cluster/.libs/
deps/vowpal_wabbit/cluster/Makefile
deps/vowpal_wabbit/cluster/*.o
deps/vowpal_wabbit/config.log
deps/vowpal_wabbit/config.status
deps/vowpal_wabbit/library/*.o
deps/vowpal_wabbit/library/Makefile
deps/vowpal_wabbit/libtool
deps/vowpal_wabbit/libvw.pc
deps/vowpal_wabbit/Makefile
deps/vowpal_wabbit/vowpalwabbit/config.h
deps/vowpal_wabbit/vowpalwabbit/.libs/
deps/vowpal_wabbit/vowpalwabbit/*.o
deps/vowpal_wabbit/vowpalwabbit/Makefile
deps/vowpal_wabbit/vowpalwabbit/stamp-h1
deps/xg/xg.o
doc/doxygen/
include/gssw.h
include/handlegraph/
include/ips4o/
include/ips4o.hpp
include/kseq.h
include/lru_cache.h
include/mmmultimap.hpp
include/mmmultiset.hpp
include/pliib.hpp
include/progress_bar.hpp
include/sha1.hpp
include/simde/
include/sonLib/
include/sparsepp/
include/ssw_cpp.h
include/structures/
include/sublinearLS/
include/tinyfa.hpp
include/vg/
include/vowpalwabbit/
include/xg.hpp
obj/
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