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/* Read matlab save files with libmatio
*
* 4/8/09
* - transpose on load, assemble planes into bands (thanks Mikhail)
* 20/12/11
* - reworked as some fns ready for new-style classes
* 21/8/14
* - swap width/height
* - set interpretation to rgb16 etc.
* 16/2/16
* - more specific is_a test
*/
/*
This file is part of VIPS.
VIPS is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
02110-1301 USA
*/
/*
These files are distributed with VIPS - http://www.vips.ecs.soton.ac.uk
*/
/*
Remaining issues:
+ it will not do complex images
+ it will not handle sparse matricies
+ it loads the first variable in the file with between 1 and 3 dimensions,
is this sensible behaviour?
+ load only, no save
*/
/*
#define DEBUG
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif /*HAVE_CONFIG_H*/
#include <glib/gi18n-lib.h>
#ifdef HAVE_MATIO
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <vips/vips.h>
#include <vips/internal.h>
#include <matio.h>
#include "pforeign.h"
/* What we track during a Mat-file read.
*/
typedef struct {
char *filename;
VipsImage *out;
mat_t *mat;
matvar_t *var;
} Read;
static void
read_destroy( Read *read )
{
VIPS_FREE( read->filename );
VIPS_FREEF( Mat_VarFree, read->var );
VIPS_FREEF( Mat_Close, read->mat );
g_free( read );
}
static Read *
read_new( const char *filename, VipsImage *out )
{
Read *read;
if( !(read = VIPS_NEW( NULL, Read )) )
return( NULL );
read->filename = vips_strdup( NULL, filename );
read->out = out;
read->mat = NULL;
read->var = NULL;
if( !(read->mat = Mat_Open( filename, MAT_ACC_RDONLY )) ) {
vips_error( "mat2vips",
_( "unable to open \"%s\"" ), filename );
read_destroy( read );
return( NULL );
}
for(;;) {
if( !(read->var = Mat_VarReadNextInfo( read->mat )) ) {
vips_error( "mat2vips",
_( "no matrix variables in \"%s\"" ),
filename );
read_destroy( read );
return( NULL );
}
#ifdef DEBUG
printf( "mat2vips: seen:\n" );
printf( "var->name == %s\n", read->var->name );
printf( "var->class_type == %d\n", read->var->class_type );
printf( "var->rank == %d\n", read->var->rank );
#endif /*DEBUG*/
/* Vector to colour image is OK for us.
*/
if( read->var->rank >= 1 && read->var->rank <= 3 )
break;
VIPS_FREEF( Mat_VarFree, read->var );
}
return( read );
}
/* Matlab classes -> VIPS band formats.
*/
static int mat2vips_formats[][2] = {
{ MAT_C_UINT8, VIPS_FORMAT_UCHAR },
{ MAT_C_INT8, VIPS_FORMAT_CHAR },
{ MAT_C_UINT16, VIPS_FORMAT_USHORT },
{ MAT_C_INT16, VIPS_FORMAT_SHORT },
{ MAT_C_UINT32, VIPS_FORMAT_UINT },
{ MAT_C_INT32, VIPS_FORMAT_INT },
{ MAT_C_SINGLE, VIPS_FORMAT_FLOAT },
{ MAT_C_DOUBLE, VIPS_FORMAT_DOUBLE }
};
/* Pick an interpretation.
*/
static VipsInterpretation
mat2vips_pick_interpretation( int bands, VipsBandFormat format )
{
if( bands == 3 &&
vips_band_format_is8bit( format ) )
return( VIPS_INTERPRETATION_sRGB );
if( bands == 3 &&
(format == VIPS_FORMAT_USHORT ||
format == VIPS_FORMAT_SHORT) )
return( VIPS_INTERPRETATION_RGB16 );
if( bands == 1 &&
(format == VIPS_FORMAT_USHORT ||
format == VIPS_FORMAT_SHORT) )
return( VIPS_INTERPRETATION_GREY16 );
if( bands > 1 )
return( VIPS_INTERPRETATION_MULTIBAND );
return( VIPS_INTERPRETATION_MULTIBAND );
}
static int
mat2vips_get_header( matvar_t *var, VipsImage *im )
{
int width, height, bands;
VipsBandFormat format;
VipsInterpretation interpretation;
int i;
width = 1;
bands = 1;
switch( var->rank ) {
case 3:
bands = var->dims[2];
case 2:
width = var->dims[1];
case 1:
height = var->dims[0];
break;
default:
vips_error( "mat2vips",
_( "unsupported rank %d\n" ), var->rank );
return( -1 );
}
for( i = 0; i < VIPS_NUMBER( mat2vips_formats ); i++ )
if( mat2vips_formats[i][0] == var->class_type )
break;
if( i == VIPS_NUMBER( mat2vips_formats ) ) {
vips_error( "mat2vips", _( "unsupported class type %d\n" ),
var->class_type );
return( -1 );
}
format = mat2vips_formats[i][1];
interpretation = mat2vips_pick_interpretation( bands, format );
vips_image_init_fields( im,
width, height, bands,
format,
VIPS_CODING_NONE, interpretation, 1.0, 1.0 );
/* We read to a huge memory area.
*/
if( vips_image_pipelinev( im, VIPS_DEMAND_STYLE_ANY, NULL ) )
return( -1 );
return( 0 );
}
int
vips__mat_header( const char *filename, VipsImage *out )
{
Read *read;
#ifdef DEBUG
printf( "mat2vips_header: reading \"%s\"\n", filename );
#endif /*DEBUG*/
if( !(read = read_new( filename, out )) )
return( -1 );
if( mat2vips_get_header( read->var, read->out ) ) {
read_destroy( read );
return( -1 );
}
read_destroy( read );
return( 0 );
}
static int
mat2vips_get_data( mat_t *mat, matvar_t *var, VipsImage *im )
{
int y;
VipsPel *buffer;
const int es = VIPS_IMAGE_SIZEOF_ELEMENT( im );
/* Matlab images are plane-separate, so we have to assemble bands in
* image-size chunks.
*/
const guint64 is = es * VIPS_IMAGE_N_PELS( im );
if( Mat_VarReadDataAll( mat, var ) ) {
vips_error( "mat2vips", "%s",
_( "Mat_VarReadDataAll failed" ) );
return( -1 );
}
/* Matlab images are in columns, so we have to transpose into
* scanlines with this buffer.
*/
if( !(buffer = VIPS_ARRAY( im,
VIPS_IMAGE_SIZEOF_LINE( im ), VipsPel )) )
return( -1 );
for( y = 0; y < im->Ysize; y++ ) {
const VipsPel *p = var->data + y * es;
int x;
VipsPel *q;
q = buffer;
for( x = 0; x < im->Xsize; x++ ) {
int b;
for( b = 0; b < im->Bands; b++ ) {
const VipsPel *p2 = p + b * is;
int z;
for( z = 0; z < es; z++ )
q[z] = p2[z];
q += es;
}
p += es * im->Ysize;
}
if( vips_image_write_line( im, y, buffer ) )
return( -1 );
}
return( 0 );
}
int
vips__mat_load( const char *filename, VipsImage *out )
{
Read *read;
#ifdef DEBUG
printf( "mat2vips: reading \"%s\"\n", filename );
#endif /*DEBUG*/
if( !(read = read_new( filename, out )) )
return( -1 );
if( mat2vips_get_header( read->var, read->out ) ||
mat2vips_get_data( read->mat, read->var, read->out ) ) {
read_destroy( read );
return( -1 );
}
read_destroy( read );
return( 0 );
}
int
vips__mat_ismat( const char *filename )
{
unsigned char buf[15];
if( vips__get_bytes( filename, buf, 10 ) == 10 &&
vips_isprefix( "MATLAB 5.0", (char *) buf ) )
return( 1 );
return( 0 );
}
const char *vips__mat_suffs[] = { ".mat", NULL };
#endif /*HAVE_MATIO*/
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