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/* load openslide from a file
*
* 5/12/11
* - from openslideload.c
* 28/2/12
* - convert "layer" to "level" where externally visible
* 11/4/12
* - convert remaining uses of "layer" to "level"
* 20/9/12
* - add Leica filename suffix
* - drop glib log handler (unneeded with >= 3.3.0)
*/
/*
This file is part of VIPS.
VIPS is free software; you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program; if not, write to the Free Software
Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA
02110-1301 USA
*/
/*
These files are distributed with VIPS - http://www.vips.ecs.soton.ac.uk
*/
/*
#define DEBUG
*/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif /*HAVE_CONFIG_H*/
#include <vips/intl.h>
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <vips/vips.h>
#include <vips/buf.h>
#include <vips/internal.h>
#ifdef HAVE_OPENSLIDE
#include "openslide2vips.h"
typedef struct _VipsForeignLoadOpenslide {
VipsForeignLoad parent_object;
/* Filename for load.
*/
char *filename;
/* Load this level.
*/
int level;
/* Crop to image bounds.
*/
gboolean autocrop;
/* Load this associated image.
*/
char *associated;
} VipsForeignLoadOpenslide;
typedef VipsForeignLoadClass VipsForeignLoadOpenslideClass;
G_DEFINE_TYPE( VipsForeignLoadOpenslide, vips_foreign_load_openslide,
VIPS_TYPE_FOREIGN_LOAD );
static VipsForeignFlags
vips_foreign_load_openslide_get_flags_filename( const char *filename )
{
/* We can't tell from just the filename, we need to know what part of
* the file the user wants. But it'll usually be partial.
*/
return( VIPS_FOREIGN_PARTIAL );
}
static VipsForeignFlags
vips_foreign_load_openslide_get_flags( VipsForeignLoad *load )
{
VipsForeignLoadOpenslide *openslide = (VipsForeignLoadOpenslide *) load;
VipsForeignFlags flags;
flags = 0;
if( !openslide->associated )
flags |= VIPS_FOREIGN_PARTIAL;
return( flags );
}
static int
vips_foreign_load_openslide_header( VipsForeignLoad *load )
{
VipsForeignLoadOpenslide *openslide = (VipsForeignLoadOpenslide *) load;
if( vips__openslide_read_header( openslide->filename, load->out,
openslide->level, openslide->autocrop,
openslide->associated ) )
return( -1 );
VIPS_SETSTR( load->out->filename, openslide->filename );
return( 0 );
}
static int
vips_foreign_load_openslide_load( VipsForeignLoad *load )
{
VipsForeignLoadOpenslide *openslide = (VipsForeignLoadOpenslide *) load;
if( !openslide->associated ) {
if( vips__openslide_read( openslide->filename, load->real,
openslide->level, openslide->autocrop ) )
return( -1 );
}
else {
if( vips__openslide_read_associated(
openslide->filename, load->real,
openslide->associated ) )
return( -1 );
}
return( 0 );
}
static const char *vips_foreign_openslide_suffs[] = {
".svs", /* Aperio */
".vms", ".vmu", ".ndpi", /* Hamamatsu */
".scn", /* Leica */
".mrxs", /* MIRAX */
".svslide", /* Sakura */
".tif", /* Trestle */
".bif", /* Ventana */
NULL
};
static void
vips_foreign_load_openslide_class_init( VipsForeignLoadOpenslideClass *class )
{
GObjectClass *gobject_class = G_OBJECT_CLASS( class );
VipsObjectClass *object_class = (VipsObjectClass *) class;
VipsForeignClass *foreign_class = (VipsForeignClass *) class;
VipsForeignLoadClass *load_class = (VipsForeignLoadClass *) class;
gobject_class->set_property = vips_object_set_property;
gobject_class->get_property = vips_object_get_property;
object_class->nickname = "openslideload";
object_class->description = _( "load file with OpenSlide" );
/* We need to be ahead of the tiff sniffer since many OpenSlide
* formats are tiff derivatives. If we see a tiff which would be
* better handled by the vips tiff loader we are careful to say no.
*
* We need to be ahead of JPEG, since MRXS images are also
* JPEGs.
*/
foreign_class->priority = 100;
foreign_class->suffs = vips_foreign_openslide_suffs;
load_class->is_a = vips__openslide_isslide;
load_class->get_flags_filename =
vips_foreign_load_openslide_get_flags_filename;
load_class->get_flags = vips_foreign_load_openslide_get_flags;
load_class->header = vips_foreign_load_openslide_header;
load_class->load = vips_foreign_load_openslide_load;
VIPS_ARG_STRING( class, "filename", 1,
_( "Filename" ),
_( "Filename to load from" ),
VIPS_ARGUMENT_REQUIRED_INPUT,
G_STRUCT_OFFSET( VipsForeignLoadOpenslide, filename ),
NULL );
VIPS_ARG_INT( class, "level", 10,
_( "Level" ),
_( "Load this level from the file" ),
VIPS_ARGUMENT_OPTIONAL_INPUT,
G_STRUCT_OFFSET( VipsForeignLoadOpenslide, level ),
0, 100000, 0 );
VIPS_ARG_BOOL( class, "autocrop", 11,
_( "Autocrop" ),
_( "Crop to image bounds" ),
VIPS_ARGUMENT_OPTIONAL_INPUT,
G_STRUCT_OFFSET( VipsForeignLoadOpenslide, autocrop ),
FALSE );
VIPS_ARG_STRING( class, "associated", 12,
_( "Associated" ),
_( "Load this associated image" ),
VIPS_ARGUMENT_OPTIONAL_INPUT,
G_STRUCT_OFFSET( VipsForeignLoadOpenslide, associated ),
NULL );
}
static void
vips_foreign_load_openslide_init( VipsForeignLoadOpenslide *openslide )
{
}
#endif /*HAVE_OPENSLIDE*/
/**
* vips_openslideload:
* @filename: file to load
* @out: decompressed image
* @...: %NULL-terminated list of optional named arguments
*
* Optional arguments:
*
* * @level: load this level
* * @associated: load this associated image
* * @autocrop: crop to image bounds
*
* Read a virtual slide supported by the OpenSlide library into a VIPS image.
* OpenSlide supports images in Aperio, Hamamatsu, MIRAX, Sakura, Trestle,
* and Ventana formats.
*
* To facilitate zooming, virtual slide formats include multiple scaled-down
* versions of the high-resolution image. These are typically called
* "levels". By default, vips_openslideload() reads the highest-resolution
* level (level 0). Set @level to the level number you want.
*
* In addition to the slide image itself, virtual slide formats sometimes
* include additional images, such as a scan of the slide's barcode.
* OpenSlide calls these "associated images". To read an associated image,
* set @associated to the image's name.
* A slide's associated images are listed in the
* "slide-associated-images" metadata item.
*
* The output of this operator is always RGBA.
*
* See also: vips_image_new_from_file().
*
* Returns: 0 on success, -1 on error.
*/
int
vips_openslideload( const char *filename, VipsImage **out, ... )
{
va_list ap;
int result;
va_start( ap, out );
result = vips_call_split( "openslideload", ap, filename, out );
va_end( ap );
return( result );
}
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