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#!/usr/bin/env python
###############################################################################
##
## Copyright (C) 2014-2016, New York University.
## Copyright (C) 2011-2014, NYU-Poly.
## Copyright (C) 2006-2011, University of Utah.
## All rights reserved.
## Contact: contact@vistrails.org
##
## This file is part of VisTrails.
##
## "Redistribution and use in source and binary forms, with or without
## modification, are permitted provided that the following conditions are met:
##
## - Redistributions of source code must retain the above copyright notice,
## this list of conditions and the following disclaimer.
## - Redistributions in binary form must reproduce the above copyright
## notice, this list of conditions and the following disclaimer in the
## documentation and/or other materials provided with the distribution.
## - Neither the name of the New York University nor the names of its
## contributors may be used to endorse or promote products derived from
## this software without specific prior written permission.
##
## THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
## AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
## THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
## PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR
## CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
## EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
## PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
## OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
## WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
## OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
## ADVISED OF THE POSSIBILITY OF SUCH DAMAGE."
##
###############################################################################
# This runs on crowdlabs only!!!
# the input file format should follow this:
# url=http://www.crowdlabs.org
# wfid=598
# vtid=34
# pdf=true
# workflow=true
# buildalways=true
# other=width=0.45\linewidth
#
# buildalways, workflow and pdf are optional
# at least one of wfid or vtid must be provided
import sys
import os.path
import os
from http.client import HTTP
from urllib.parse import urlparse
import urllib.request, urllib.error, urllib.parse
import re
import logging
debug = True
logger = None
###############################################################################
def log(msg):
global debug, logger
if debug:
logger.debug(msg)
###############################################################################
def usage():
print("Usage: ")
print(" %s path/to/options_file" % sys.argv[0])
sys.exit(1)
###############################################################################
def bool_conv(x):
"""bool_conv(x: str) -> bool
Converts a string to boolean.
"""
s = str(x).upper()
if s == 'TRUE':
return True
if s == 'FALSE':
return False
###############################################################################
def path_exists_and_not_empty(path):
"""path_exists_and_not_empty(path:str) -> boolean
Returns True if given path exists and it's not empty, otherwise returns
False.
"""
if os.path.exists(path):
for root, dirs, file_names in os.walk(path):
break
if len(file_names) > 0:
return True
return False
###############################################################################
def build_vistrails_cmd_line(path_to_vistrails, host, db_name, vt_id, version,
port, path_to_figures):
""" build_vistrails_cmd_line(path_to_vistrails: str, host: str,
db_name: str, vt_id: str, version: str,
path_to_figures: str) -> str
Build the command line to run vistrails with the given parameters.
"""
cmd_line = 'python "%s" -b -e "%s" -t %s -f %s -r %s -u %s "%s:%s" > \
vistrails.log' % (vt_user,
path_to_vistrails,
path_to_figures,
host,
db_name,
port,
vt_id,
version)
return cmd_line
###############################################################################
def generate_latex(server_url, wfid, path_to_figures, graphics_options):
"""generate_latex(wfid: str, execute: bool,
showspreadsheetonly: bool, path_to_figures: str,
graphics_options: str) -> str
This generates a piece of latex code containing the \href command and
a \includegraphics command for each image generated.
"""
log("generate_latex")
url_params = "details/%s/" % wfid
url_params = url_params.replace("%","\%")
url = "%s%s"%(server_url,url_params)
href = "\href{%s}{" % url
for root, dirs, file_names in os.walk(path_to_figures):
break
n = len(file_names)
s = ''
for f in file_names:
filename = os.path.join(path_to_figures,f).replace("%","\%")
if graphics_options:
s += "\includegraphics[%s]{%s}\n" % (graphics_options, filename)
else:
s += "\includegraphics{%s}\n" % filename
s += "}"
return href+s
###############################################################################
def generate_latex_error(error_msg):
""" generate_latex_error(error_msg: str) -> str
this generates a piece of latex code with an error message.
"""
s = """\\PackageError{vistrails}{ An error occurred when executing vistrails. \\MessageBreak
%s
}{vistrails}""" % error_msg
return s
###############################################################################
def download(url,filename):
try:
furl = urllib.request.urlopen(url)
f = file(filename,'wb')
f.write(furl.read())
f.close()
return True
except:
return False
###############################################################################
def download_as_text(url):
try:
furl = urllib.request.urlopen(url)
s = furl.read()
return s
except:
return None
###############################################################################
def download_workflow(url_crowdlabs, wfid, path_to_figures, wgraph=False,
pdf=False, build_always=False):
"""download_workflow(url_crowdlabs: str, wfid: str, path_to_figures: str,
wgraph: bool, pdf: bool, build_always: bool)
-> tuple(bool, str)
Try to download image from url and returns a tuple containing a boolean
saying if it was successful or not and the latex code.
"""
log("download_workflow")
if not path_exists_and_not_empty(path_to_figures) or build_always:
if not os.path.exists(path_to_figures):
os.makedirs(path_to_figures)
if check_url(url_crowdlabs):
website = "://".join(urlparse(url_crowdlabs)[:2])
if not wgraph:
if not pdf:
request = "/vistrails/workflows/generate_visualization_image/%s/"%wfid
else:
request = "/vistrails/workflows/generate_visualization_pdf/%s/"%wfid
else:
if not pdf:
request = "/vistrails/workflows/generate_pipeline_image/%s/"%wfid
else:
request = "/vistrails/workflows/generate_pipeline_pdf/%s/"%wfid
url = url_crowdlabs + request
log("from %s"%url)
try:
page = download_as_text(url)
# we will look for a list of comma separated in the html
images = page.split(",")
if len(images) > 0:
failed = False
for i in images:
msg = ''
pngfile = i.strip()
if not check_url(pngfile):
img = website + pngfile
else:
img = pngfile
if not download(img, os.path.join(path_to_figures,
os.path.basename(img))):
msg += "Error when download image: %s. <return>" %\
img
failed = True
if not failed:
log("success")
return (True, generate_latex(url_crowdlabs + "/vistrails/workflows/",
wfid,
path_to_figures,
graphics_options))
else:
log("failed: %s"%msg)
return (False, generate_latex_error(msg))
else:
msg = "Web server returned: %s" % page
log("failed: %s"%msg)
return (False, generate_latex_error(msg))
except Exception as e:
log("failed with exception: %s"%str(e))
return (False, generate_latex_error(str(e)))
else:
msg = "Invalid url: %s" % url_crowdlabs
return (False, generate_latex_error(msg))
else:
log("using cached images")
return (True, generate_latex(url_crowdlabs + "/vistrails/workflows/",
wfid,
path_to_figures,
graphics_options))
###############################################################################
def download_tree(url_crowdlabs, vtid, path_to_figures, pdf=False,
build_always=False):
"""download_tree(url_crowdlabs: str, vtid: str, path_to_figures: str,
pdf: bool, build_always: bool)
-> tuple(bool, str)
Try to download tree from url and returns a tuple containing a boolean
saying if it was successful or not and the latex code.
"""
log("download_tree")
if not path_exists_and_not_empty(path_to_figures) or build_always:
if not os.path.exists(path_to_figures):
os.makedirs(path_to_figures)
if check_url(url_crowdlabs):
website = "://".join(urlparse(url_crowdlabs)[:2])
if not pdf:
request = "/vistrails/generate_provenance_image/%s/"%vtid
else:
request = "/vistrails/generate_provenance_pdf/%s/"%vtid
url = url_crowdlabs + request
log("from %s"%url)
try:
page = download_as_text(url)
# we will look for a list of comma separated in the html
images = page.split(",")
if len(images) > 0:
failed = False
for i in images:
msg = ''
pngfile = i.strip()
if not check_url(pngfile):
img = website + pngfile
else:
img = pngfile
if not download(img, os.path.join(path_to_figures,
os.path.basename(img))):
msg += "Error when download image: %s. <return>" %\
img
failed = True
if not failed:
log("success")
return (True, generate_latex(url_crowdlabs + "/vistrails/", vtid,
path_to_figures,
graphics_options))
else:
log("failed: %s"%msg)
return (False, generate_latex_error(msg))
else:
msg = "Web server returned: %s" % page
log("failed: %s"%msg)
return (False, generate_latex_error(msg))
except Exception as e:
log("failed with exception: %s"%str(e))
return (False, generate_latex_error(str(e)))
else:
msg = "Invalid url: %s" % url_crowdlabs
log("failed: %s"%msg)
return (False, generate_latex_error(msg))
else:
log("using cached images")
return (True, generate_latex(url_crowdlabs + "/vistrails/", vtid,
path_to_figures, graphics_options))
###############################################################################
def check_url(url):
"""check_url(url:str) -> bool
Check if a URL exists using the url's header.
"""
try:
p = urlparse(url)
h = HTTP(p[1])
h.putrequest('HEAD', p[2])
h.endheaders()
if h.getreply()[0] == 200:
return True
else:
return False
except:
return False
###############################################################################
options_file = None
try:
options_file = open(sys.argv[1])
except IndexError:
usage()
if debug:
logger = logging.getLogger("crowdLabsLatex")
handler = logging.FileHandler('crowdlabs.log')
handler.setFormatter(logging.Formatter('crowdLabsLatex - %(asctime)s %(message)s'))
handler.setLevel(logging.DEBUG)
logger.setLevel(logging.DEBUG)
logger.addHandler(handler)
log("***********************************")
log("********* SESSION START ***********")
lines = options_file.readlines()
urlcrowdlabs = None
wfid = None
vtid = None
pdf = False
wgraph = False
tree = False
graphics_options = None
build_always = False
run_locally = True
for line in lines:
args = line.split("=")
if len(args) > 2:
args[1] = "=".join(args[1:])
if args[0] == "url":
urlcrowdlabs = args[1].strip(" \n")
elif args[0] == "wfid":
wfid = args[1].strip(" \n")
elif args[0] == "vtid":
vtid = args[1].strip(" \n")
tree = True
elif args[0] == 'pdf':
pdf = bool_conv(args[1].strip(" \n"))
elif args[0] == 'workflow':
wgraph = bool_conv(args[1].strip(" \n"))
elif args[0] == "buildalways":
build_always = bool_conv(args[1].strip(" \n"))
elif args[0] == "other":
graphics_options = args[1].strip(" \n")
# then we use the combination wf_wfid or vt_vtid to
# create a unique folder.
# TODO: Maybe we should use a hash of this. For now let's keep it
# legible.
out_type = "png"
if pdf:
out_type = 'pdf'
if check_url(urlcrowdlabs):
if wfid is not None:
folder_suffix = ""
if wgraph:
folder_suffix = "_graph"
path_to_figures = os.path.join("crowdlabs_images",
"wf_%s_%s%s" %(wfid, out_type,folder_suffix))
log(path_to_figures)
result, latex = download_workflow(urlcrowdlabs, wfid,
path_to_figures, wgraph, pdf, build_always)
elif vtid is not None:
path_to_figures = os.path.join("crowdlabs_images",
"vt_%s_%s" %(vtid, out_type))
log(path_to_figures)
result, latex = download_tree(urlcrowdlabs, vtid,
path_to_figures, pdf, build_always)
else:
result, latex = (False, generate_latex_error("Invalid url %s." % urlcrowdlabs))
# the printed answer will be included inline by the latex compiler.
print(latex)
if result == True:
log("********** SESSION END ************")
log("***********************************")
sys.exit(0)
else:
log("********** SESSION END ************")
log("***********************************")
sys.exit(1)
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