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#!/bin/sh
# autopkgtest check: Run some tests to verify executables work
# Author: Sascha Steinbiss <satta@debian.org>
set -e
TESTDIR=$(pwd)/debian/tests
WORKDIR=$(mktemp -d)
trap "rm -rf $WORKDIR" 0 INT QUIT ABRT PIPE TERM
cd $WORKDIR
cp $TESTDIR/U89959_*.gz .
gunzip U89959_*.fas.gz
mkvtree -allout -db U89959_genomic.fas -dna -pl -v
vmatch -selfun /usr/lib/vmatch/SELECT/xmlout.so -q U89959_ests.fas -l 200 -best 20 U89959_genomic.fas | grep -v Vmatchindex > xmlout.1.xml
vmatch -q U89959_ests.fas -l 200 -best 20 U89959_genomic.fas | grep -v args > vmatch.1.txt
diff $TESTDIR/xmlout.ref.xml xmlout.1.xml
diff $TESTDIR/vmatch.ref.txt vmatch.1.txt
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