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#!/usr/bin/env python
## Program: VMTK
## Module: $RCSfile: vmtkgeodesicsurfaceresolution.py,v $
## Language: Python
## Date: $$
## Version: $$
## Copyright (c) Luca Antiga, David Steinman. All rights reserved.
## See LICENCE file for details.
## This software is distributed WITHOUT ANY WARRANTY; without even
## the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
## PURPOSE. See the above copyright notices for more information.
## Note: this class was contributed by
## Tangui Morvan
## Kalkulo AS
## Simula Research Laboratory
## This allows the user to specify a edge-length array to be used to specify resolution for surface remeshing
## The array is produced by RBF interpolation of values specified by the user by positioning spheres
## This version use the geodesic distance along the surface instead of hte 3D euclidean distance for hte RBF
import vtk
import sys
import vtkvmtk
import vtkvmtkcontrib
import vmtkrenderer
import pypes
vmtkgeodesicsurfaceresolution = 'vmtkGeodesicSurfaceResolution'
class vmtkGeodesicSurfaceResolution(pypes.pypeScript):
def __init__(self):
pypes.pypeScript.__init__(self)
self.Surface = None
self.ResolutionArrayName = 'ResolutionArray'
self.RBFType = 'biharmonic'
self.Spheres = vtk.vtkPolyData()
self.SphereIds = vtk.vtkIdList()
self.vmtkRenderer = None
self.OwnRenderer = 0
self.DisplayArray = False
self.SurfaceMapper = None
self.CurrentSphereId = -1
self.SphereWidget = None
self.Opacity = 1.
self.SpheresActor = None
self.ScalarBarActor = None
self.InteractionMode = 0
self.ExamineSurface = None
self.ExamineSpheres = vtk.vtkPolyData()
self.ExamineSpheresActor = None
self.ExamineText = None
self.SetScriptName('vtksurfaceresolution')
self.SetInputMembers([
['Surface','i','vtkPolyData',1,'','the input surface','vmtksurfacereader'],
['ResolutionArrayName','resolutionarray','str',1,'','array storing the desired edge length'],
['RBFType','rbftype','str',1,'["thinplatespline","biharmonic","triharmonic"]','the type of RBF interpolation'],
['Opacity','opacity','float',1,'(0.0,1.0)','object opacities in the scene'],
['vmtkRenderer','renderer','vmtkRenderer',1,'','external renderer']
])
self.SetOutputMembers([
['Surface','o','vtkPolyData',1,'','','vmtksurfacewriter']
])
def ComputeArray(self):
rbf = vtkvmtkcontrib.vtkvmtkPolyDataGeodesicRBFInterpolation()
rbf.SetSeedIds(self.SphereIds)
seedValues = self.Spheres.GetPointData().GetScalars()
rbf.SetSeedValues(seedValues)
if self.RBFType == "thinplatespline":
rbf.SetRBFTypeToThinPlateSpline()
elif self.RBFType == "biharmonic":
rbf.SetRBFTypeToBiharmonic()
elif self.RBFType == "triharmonic":
rbf.SetRBFTypeToTriharmonic()
rbf.SetInput(self.Surface)
rbf.SetInterpolatedArrayName(self.ResolutionArrayName)
rbf.Update()
return rbf.GetOutput()
def InitializeSpheres(self):
if (self.InteractionMode==0):
self.SphereIds.Initialize()
self.Spheres.Initialize()
seedPoints = vtk.vtkPoints()
self.Spheres.SetPoints(seedPoints)
self.Spheres.GetPointData().Initialize()
seedRadii = vtk.vtkDoubleArray()
self.Spheres.GetPointData().SetScalars(seedRadii)
self.CurrentSphereId = -1
self.SphereWidget.Off()
else:
self.ExamineSpheres.Initialize()
spherePoints = vtk.vtkPoints()
self.ExamineSpheres.SetPoints(spherePoints)
self.ExamineSpheres.GetPointData().Initialize()
sphereRadii = vtk.vtkDoubleArray()
self.ExamineSpheres.GetPointData().SetScalars(sphereRadii)
def PlaceSphere(self):
if self.CurrentSphereId == -1:
return
self.SphereWidget.SetCenter(self.Spheres.GetPoint(self.CurrentSphereId))
self.SphereWidget.SetRadius(self.Spheres.GetPointData().GetScalars().GetValue(self.CurrentSphereId))
def SphereCallback(self,widget,event_string):
if self.CurrentSphereId == -1:
return
minRadius = self.Surface.GetLength()*0.001
if self.SphereWidget.GetRadius() < minRadius:
self.SphereWidget.SetRadius(minRadius)
self.Spheres.GetPointData().GetScalars().SetValue(self.CurrentSphereId,self.SphereWidget.GetRadius())
self.Spheres.Modified()
def UndoCallback(self, obj):
self.InitializeSpheres()
self.Spheres.Modified()
self.vmtkRenderer.RenderWindow.Render()
def PlusCallback(self, obj):
if self.CurrentSphereId != -1:
#increase sphere radius
newval = self.Spheres.GetPointData().GetScalars().GetValue(self.CurrentSphereId) + self.Surface.GetLength()*0.01
self.Spheres.GetPointData().GetScalars().SetValue(self.CurrentSphereId,newval)
self.Spheres.Modified()
self.PlaceSphere()
self.vmtkRenderer.RenderWindow.Render()
def MinusCallback(self, obj):
if self.CurrentSphereId != -1:
#decrease sphere radius
newval = self.Spheres.GetPointData().GetScalars().GetValue(self.CurrentSphereId) - self.Surface.GetLength()*0.01
if newval> 0:
self.Spheres.GetPointData().GetScalars().SetValue(self.CurrentSphereId,newval)
self.Spheres.Modified()
self.PlaceSphere()
self.vmtkRenderer.RenderWindow.Render()
def NextSphereCallback(self, obj):
if self.CurrentSphereId != -1:
self.CurrentSphereId = (self.CurrentSphereId + 1) % self.Spheres.GetNumberOfPoints();
self.PlaceSphere()
self.vmtkRenderer.RenderWindow.Render()
def PreviousSphereCallback(self, obj):
if self.CurrentSphereId != -1:
self.CurrentSphereId = (self.CurrentSphereId - 1) % self.Spheres.GetNumberOfPoints();
self.PlaceSphere()
self.vmtkRenderer.RenderWindow.Render()
def DisplayCallback(self, obj):
self.DisplayArray = not self.DisplayArray
if self.DisplayArray:
self.ExamineSurface = self.ComputeArray()
self.SurfaceMapper.SetInput(self.ExamineSurface)
self.ExamineSurface.GetPointData().SetActiveScalars(self.ResolutionArrayName)
array = self.ExamineSurface.GetPointData().GetScalars()
if (array):
array.Modified()
self.SurfaceMapper.SetScalarRange(array.GetRange(0))
self.ScalarBarActor.VisibilityOn()
else:
self.SurfaceMapper.SetInput(self.Surface)
self.ScalarBarActor.VisibilityOff()
self.SurfaceMapper.SetScalarVisibility(self.DisplayArray)
self.vmtkRenderer.RenderWindow.Render()
def ExmienModeCallback(self, obj):
#Switch beetween examien and interact mode
if self.InteractionMode == 0:
self.InteractionMode = 1
self.ExamineSurface = self.ComputeArray()
#self.SpheresActor.VisibilityOff()
self.SphereWidget.Off()
self.ExamineSpheresActor.VisibilityOn()
self.ExamineText.VisibilityOn()
self.InitializeSpheres()
else:
self.InteractionMode = 0
#Compute the distances
self.SpheresActor.VisibilityOn()
self.ExamineSpheresActor.VisibilityOff()
self.ExamineText.VisibilityOff()
if (self.CurrentSphereId!=-1):
self.SphereWidget.On()
self.vmtkRenderer.RenderWindow.Render()
def PickCallback(self, obj):
picker = vtk.vtkCellPicker()
picker.SetTolerance(1E-4 * self.Surface.GetLength())
eventPosition = self.vmtkRenderer.RenderWindowInteractor.GetEventPosition()
#eventPosition = obj.GetEventPosition()
result = picker.Pick(float(eventPosition[0]),float(eventPosition[1]),0.0,self.vmtkRenderer.Renderer)
if result == 0:
return
pickPosition = picker.GetPickPosition()
pickedCellPointIds = self.Surface.GetCell(picker.GetCellId()).GetPointIds()
minDistance = 1E10
pickedPointId = -1
for i in range(pickedCellPointIds.GetNumberOfIds()):
distance = vtk.vtkMath.Distance2BetweenPoints(pickPosition,self.Surface.GetPoint(pickedCellPointIds.GetId(i)))
if distance < minDistance:
minDistance = distance
pickedPointId = pickedCellPointIds.GetId(i)
if pickedPointId == -1:
pickedPointId = pickedCellPointIds.GetId(0)
pickedPoint = self.Surface.GetPoint(pickedPointId)
if (self.InteractionMode==0):
self.SphereIds.InsertNextId(pickedPointId)
self.CurrentSphereId = self.Spheres.GetPoints().InsertNextPoint(pickedPoint)
self.Spheres.GetPointData().GetScalars().InsertNextValue(self.Surface.GetLength()*0.01)
self.Spheres.Modified()
self.PlaceSphere()
self.SphereWidget.On()
else:
self.ExamineSpheres.GetPoints().InsertNextPoint(pickedPoint)
length = 0.
array = self.ExamineSurface.GetPointData().GetArray(self.ResolutionArrayName)
if (array):
length = array.GetComponent(pickedPointId,0)
self.ExamineSpheres.GetPointData().GetScalars().InsertNextValue(length)
self.ExamineSpheres.Modified()
self.vmtkRenderer.RenderWindow.Render()
def Execute(self):
if self.Surface == None:
self.PrintError('Error: No input surface.')
if not self.vmtkRenderer:
self.vmtkRenderer = vmtkrenderer.vmtkRenderer()
self.vmtkRenderer.Initialize()
self.OwnRenderer = 1
self.vmtkRenderer.RegisterScript(self)
glyphs = vtk.vtkGlyph3D()
glyphSource = vtk.vtkSphereSource()
glyphSource.SetRadius(1)
glyphs.SetInput(self.Spheres)
glyphs.SetSource(glyphSource.GetOutput())
glyphs.SetScaleModeToScaleByScalar()
glyphs.SetScaleFactor(1.)
glyphMapper = vtk.vtkPolyDataMapper()
glyphMapper.SetInput(glyphs.GetOutput())
glyphMapper.ScalarVisibilityOff()
self.SpheresActor = vtk.vtkActor()
self.SpheresActor.SetMapper(glyphMapper)
self.SpheresActor.GetProperty().SetColor(1.0,0.0,0.0)
self.SpheresActor.GetProperty().SetOpacity(self.Opacity)
self.SpheresActor.PickableOff()
self.vmtkRenderer.Renderer.AddActor(self.SpheresActor)
examineGlyphs = vtk.vtkGlyph3D()
examineGlyphSource = vtk.vtkSphereSource()
examineGlyphSource.SetRadius(1)
examineGlyphs.SetInput(self.ExamineSpheres)
examineGlyphs.SetSource(examineGlyphSource.GetOutput())
examineGlyphs.SetScaleModeToScaleByScalar()
examineGlyphs.SetScaleFactor(1.)
examineGlyphMapper = vtk.vtkPolyDataMapper()
examineGlyphMapper.SetInput(examineGlyphs.GetOutput())
examineGlyphMapper.ScalarVisibilityOff()
self.ExamineSpheresActor = vtk.vtkActor()
self.ExamineSpheresActor.SetMapper(examineGlyphMapper)
self.ExamineSpheresActor.GetProperty().SetColor(0.0,1.0,0.0)
self.ExamineSpheresActor.GetProperty().SetOpacity(self.Opacity)
self.ExamineSpheresActor.PickableOff()
self.ExamineSpheresActor.VisibilityOff()
self.vmtkRenderer.Renderer.AddActor(self.ExamineSpheresActor)
#self.vmtkRenderer.RenderWindowInteractor.AddObserver("KeyPressEvent", self.KeyPressed)
self.vmtkRenderer.AddKeyBinding('u','undo',self.UndoCallback)
self.vmtkRenderer.AddKeyBinding('plus','Increase sphere radius',self.PlusCallback)
self.vmtkRenderer.AddKeyBinding('minus','Decrease sphere radius',self.MinusCallback)
self.vmtkRenderer.AddKeyBinding('n','Show next sphere',self.NextSphereCallback)
self.vmtkRenderer.AddKeyBinding('v','Show previous sphere',self.PreviousSphereCallback)
self.vmtkRenderer.AddKeyBinding('d','Display ',self.DisplayCallback)
self.vmtkRenderer.AddKeyBinding('w','Switch beetween examien and interact mode ',self.ExmienModeCallback)
self.vmtkRenderer.AddKeyBinding('space','Pick sphere',self.PickCallback)
self.SurfaceMapper = vtk.vtkPolyDataMapper()
self.SurfaceMapper.SetInput(self.Surface)
self.SurfaceMapper.SetScalarVisibility(self.DisplayArray)
surfaceActor = vtk.vtkActor()
surfaceActor.SetMapper(self.SurfaceMapper)
surfaceActor.GetProperty().SetOpacity(self.Opacity)
self.vmtkRenderer.Renderer.AddActor(surfaceActor)
self.ScalarBarActor = vtk.vtkScalarBarActor()
self.ScalarBarActor.SetLookupTable(self.SurfaceMapper.GetLookupTable())
self.ScalarBarActor.GetLabelTextProperty().ItalicOff()
self.ScalarBarActor.GetLabelTextProperty().BoldOff()
self.ScalarBarActor.GetLabelTextProperty().ShadowOff()
self.ScalarBarActor.SetLabelFormat('%.2f')
self.ScalarBarActor.SetTitle('distances')
self.ScalarBarActor.VisibilityOff()
self.vmtkRenderer.Renderer.AddActor(self.ScalarBarActor)
self.SphereWidget = vtk.vtkSphereWidget()
self.SphereWidget.TranslationOff()
self.SphereWidget.SetInteractor(self.vmtkRenderer.RenderWindowInteractor)
self.SphereWidget.AddObserver("InteractionEvent", self.SphereCallback)
self.ExamineText = vtk.vtkTextActor()
self.ExamineText.SetInput("Examine Mode")
self.ExamineText.GetPositionCoordinate().SetCoordinateSystemToNormalizedViewport()
self.ExamineText.SetPosition(0.05,0.95)
self.ExamineText.VisibilityOff()
self.vmtkRenderer.Renderer.AddActor2D(self.ExamineText)
self.InputInfo('Please position the mouse and press space to add spheres, \'u\' to undo\n')
any = 0
while any == 0:
self.InitializeSpheres()
self.vmtkRenderer.Render()
any = (self.Spheres.GetNumberOfPoints()>1)
self.Surface = self.ComputeArray()
if self.Surface.GetSource():
self.Surface.GetSource().UnRegisterAllOutputs()
if self.OwnRenderer:
self.vmtkRenderer.Deallocate()
if __name__=='__main__':
main = pypes.pypeMain()
main.Arguments = sys.argv
main.Execute()
|
