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#!/usr/bin/env python
## Program: VMTK
## Module: $RCSfile: vmtkbifurcationprofiles.py,v $
## Language: Python
## Date: $Date: 2006/10/17 15:16:16 $
## Version: $Revision: 1.1 $
## Copyright (c) Luca Antiga, David Steinman. All rights reserved.
## See LICENCE file for details.
## This software is distributed WITHOUT ANY WARRANTY; without even
## the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
## PURPOSE. See the above copyright notices for more information.
import vtk
import vtkvmtk
import sys
import pypes
vmtkbifurcationprofiles = 'vmtkBifurcationProfiles'
class vmtkBifurcationProfiles(pypes.pypeScript):
def __init__(self):
pypes.pypeScript.__init__(self)
self.Surface = None
self.Centerlines = None
self.BifurcationProfiles = None
self.RadiusArrayName = ''
self.GroupIdsArrayName = ''
self.CenterlineIdsArrayName = ''
self.TractIdsArrayName = ''
self.BlankingArrayName = ''
self.BifurcationProfileGroupIdsArrayName = 'BifurcationProfileGroupIds'
self.BifurcationProfileBifurcationGroupIdsArrayName = 'BifurcationProfileBifurcationGroupIds'
self.BifurcationProfileOrientationArrayName = 'BifurcationProfileOrientation'
self.SetScriptName('vmtkbifurcationprofiles')
self.SetScriptDoc('compute bifurcation profiles, i.e. the bifurcation splitting lines. The script takes in input the surface and the relative centerlines, both already split into branches.')
self.SetInputMembers([
['Surface','i','vtkPolyData',1,'','the input surface, already split into branches','vmtksurfacereader'],
['Centerlines','centerlines','vtkPolyData',1,'','the input centerlines, already split into branches','vmtksurfacereader'],
['RadiusArrayName','radiusarray','str',1,'','name of the array where centerline radius is stored'],
['GroupIdsArrayName','groupidsarray','str',1,'','name of the array where centerline group ids are stored'],
['CenterlineIdsArrayName','centerlineidsarray','str',1,'','name of the array where centerline ids are stored'],
['TractIdsArrayName','tractidsarray','str',1,'','name of the array where centerline tract ids are stored'],
['BlankingArrayName','blankingarray','str',1,'','name of the array where centerline blanking information about branches is stored'],
['BifurcationProfileGroupIdsArrayName','bifurcationprofilegroupids','str',1,'','name of the array where the group id to which each profile belongs has to be stored'],
['BifurcationProfileBifurcationGroupIdsArrayName','bifurcationprofilebifurcationgroupids','str',1,'','name of the array where the bifurcation group id to which each profile belongs has to be stored'],
['BifurcationProfileOrientationArrayName','bifurcationprofileorientation','str',1,'','name of the array containing 0 if a profile is upstream and 0 downstream its bifurcation']
])
self.SetOutputMembers([
['BifurcationProfiles','o','vtkPolyData',1,'','the output sections','vmtksurfacewriter'],
['BifurcationProfileGroupIdsArrayName','bifurcationprofilegroupids','str',1,'','name of the array where the group id to which each profile belongs are stored'],
['BifurcationProfileBifurcationGroupIdsArrayName','bifurcationprofilebifurcationgroupids','str',1,'','name of the array where the bifurcation group id to which each profile belongs has to be stored'],
['BifurcationProfileOrientationArrayName','bifurcationprofileorientation','str',1,'','name of the array containing 0 if a profile is upstream and 0 downstream its bifurcation']
])
def Execute(self):
if self.Surface == None:
self.PrintError('Error: No input surface.')
if self.Centerlines == None:
self.PrintError('Error: No input centerlines.')
bifurcationProfiles = vtkvmtk.vtkvmtkPolyDataBifurcationProfiles()
bifurcationProfiles.SetInput(self.Surface)
bifurcationProfiles.SetGroupIdsArrayName(self.GroupIdsArrayName)
bifurcationProfiles.SetCenterlines(self.Centerlines)
bifurcationProfiles.SetCenterlineRadiusArrayName(self.RadiusArrayName)
bifurcationProfiles.SetCenterlineGroupIdsArrayName(self.GroupIdsArrayName)
bifurcationProfiles.SetCenterlineIdsArrayName(self.CenterlineIdsArrayName)
bifurcationProfiles.SetCenterlineTractIdsArrayName(self.TractIdsArrayName)
bifurcationProfiles.SetBlankingArrayName(self.BlankingArrayName)
bifurcationProfiles.SetBifurcationProfileGroupIdsArrayName(self.BifurcationProfileGroupIdsArrayName)
bifurcationProfiles.SetBifurcationProfileBifurcationGroupIdsArrayName(self.BifurcationProfileBifurcationGroupIdsArrayName)
bifurcationProfiles.SetBifurcationProfileOrientationArrayName(self.BifurcationProfileOrientationArrayName)
bifurcationProfiles.Update()
self.BifurcationProfiles = bifurcationProfiles.GetOutput()
if __name__=='__main__':
main = pypes.pypeMain()
main.Arguments = sys.argv
main.Execute()
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