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/*=========================================================================
Copyright (c) Kitware, Inc.
All rights reserved.
See Copyright.txt or http://www.kitware.com/VolViewCopyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
#include "vtkContourSegmentationFrame.h"
#include "vtkObjectFactory.h"
#include "vtkKWMenuButton.h"
#include "vtkKWEntryWithLabel.h"
#include "vtkContourSegmentationFilter.h"
#include "vtkKWInternationalization.h"
#include "vtkVVWindowBase.h"
#include "vtkKWEntry.h"
#include "vtkKWPushButton.h"
#include "vtkKWMenu.h"
#include "vtkKWIcon.h"
#include "vtkVVInteractorWidgetSelector.h"
#include "vtkKWRenderWidgetPro.h"
#include "vtkKWVolumeWidget.h"
#include "vtkKWProbeImageWidget.h"
#include "vtkImageReslice.h"
#include "vtkKWImageWidget.h"
#include "vtkContourRepresentation.h"
#include "vtkKWImageMapToWindowLevelColors.h"
#include "vtkPolyData.h"
#include "vtkImageData.h"
#include "vtkKWContourWidget.h"
#include "vtkOrientedGlyphFocalPlaneContourRepresentation.h"
#include "vtkMatrix4x4.h"
#include "vtkCamera.h"
#include "vtkRenderer.h"
#include "vtkKWApplication.h"
#include "vtkKWMessageDialog.h"
//#include "vtkMetaImageWriter.h"
#include <vtksys/SystemTools.hxx>
#include "vtkKWLabel.h"
#include "vtkKWProgressCommand.h"
const char *vtkContourSegmentationFrame::SegmentationWarningDialogName
= "PromptBeforeSegmentation";
//---------------------------------------------------------------------------
vtkStandardNewMacro(vtkContourSegmentationFrame);
vtkCxxRevisionMacro(vtkContourSegmentationFrame, "$Revision: 1.26 $");
//---------------------------------------------------------------------------
vtkContourSegmentationFrame::vtkContourSegmentationFrame()
{
this->SegmentationReplaceValueEntry = NULL;
this->SegmentationTypeMenuButton1 = NULL;
this->SegmentationTypeMenuButton2 = NULL;
this->SegmentButton = NULL;
this->InteractorWidgetSelector = NULL;
this->ContourSegmentationFilter = vtkContourSegmentationFilter::New();
this->HasValidImageData = 0;
this->HasValidPolyData = 0;
this->RenderWidget = NULL;
this->PromptBeforeSegmentation = 1;
}
//---------------------------------------------------------------------------
vtkContourSegmentationFrame::~vtkContourSegmentationFrame()
{
if (this->SegmentationReplaceValueEntry)
{
this->SegmentationReplaceValueEntry->Delete();
this->SegmentationReplaceValueEntry = NULL;
}
if (this->SegmentationTypeMenuButton1)
{
this->SegmentationTypeMenuButton1->Delete();
this->SegmentationTypeMenuButton1 = NULL;
}
if (this->SegmentationTypeMenuButton2)
{
this->SegmentationTypeMenuButton2->Delete();
this->SegmentationTypeMenuButton2 = NULL;
}
if (this->SegmentButton)
{
this->SegmentButton->Delete();
this->SegmentButton = NULL;
}
this->SetInteractorWidgetSelector( NULL );
this->ContourSegmentationFilter->Delete();
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::CreateWidget()
{
if (this->IsCreated())
{
vtkErrorMacro("The widget is already created.");
return;
}
this->Superclass::CreateWidget();
ostrstream tk_cmd;
// Frame properties
this->SetLabelText(k_("Segmentation"));
this->SetEnabled(0);
// Segmentation: buttons
// 1. Replace Value entry
if (!this->SegmentationReplaceValueEntry)
{
this->SegmentationReplaceValueEntry = vtkKWEntryWithLabel::New();
}
this->SegmentationReplaceValueEntry->SetParent(this->Frame);
this->SegmentationReplaceValueEntry->Create();
this->SegmentationReplaceValueEntry->SetLabelText(
ks_("Segmentation Mode|Replace"));
this->SegmentationReplaceValueEntry->GetWidget()->SetValueAsDouble(0.0);
// Should really be the scalar type of the dataset, we will round this value
// appropriately.
this->SegmentationReplaceValueEntry->GetWidget()->SetWidth(6);
this->SegmentationReplaceValueEntry->GetWidget()->SetCommand(
this, "SegmentationReplaceValueCallback");
this->SegmentationReplaceValueEntry->SetBalloonHelpString(
k_("The regions segmented out by the contour will have their intensity "
"values replaced with this."));
tk_cmd << "pack " << this->SegmentationReplaceValueEntry->GetWidgetName()
<< " -side left -anchor nw -fill x -expand t -padx 2 -pady 2" << endl;
this->SegmentationReplaceValueEntry->SetEnabled(0);
// 2. Segment inside or outside ?
// Segment whole volume or slice ?
if (!this->SegmentationTypeMenuButton1)
{
this->SegmentationTypeMenuButton1 = vtkKWMenuButton::New();
}
this->SegmentationTypeMenuButton1->SetParent(this->Frame);
this->SegmentationTypeMenuButton1->Create();
tk_cmd << "pack " << this->SegmentationTypeMenuButton1->GetWidgetName()
<< " -side left -anchor nw -fill x -expand t -padx 2 -pady 2" << endl;
this->SegmentationTypeMenuButton1->SetEnabled(0);
if (!this->SegmentationTypeMenuButton2)
{
this->SegmentationTypeMenuButton2 = vtkKWMenuButton::New();
}
this->SegmentationTypeMenuButton2->SetParent(this->Frame);
this->SegmentationTypeMenuButton2->Create();
tk_cmd << "pack " << this->SegmentationTypeMenuButton2->GetWidgetName()
<< " -side left -anchor nw -fill x -expand t -padx 2 -pady 2" << endl;
this->SegmentationTypeMenuButton2->SetEnabled(0);
// 2. The button that does the segmentation.
if (!this->SegmentButton)
{
this->SegmentButton = vtkKWPushButton::New();
}
char command[256];
this->SegmentButton->SetParent(this->Frame);
this->SegmentButton->Create();
sprintf(command, "ContourSegmentCallback");
this->SegmentButton->SetCommand(this, command);
this->SegmentButton->SetText("Segment using contour");
this->SegmentButton->SetImageToPredefinedIcon(
vtkKWIcon::IconNuvola16x16ActionsEditCut);
this->SegmentButton->SetBalloonHelpString(
ks_("Segmentation|Segment the contour."));
tk_cmd << "pack " << this->SegmentButton->GetWidgetName()
<< " -side left -anchor nw -fill both -expand n -padx 2 -pady 2" << endl;
this->SegmentButton->SetEnabled(0);
// Pack
tk_cmd << ends;
this->Script(tk_cmd.str());
tk_cmd.rdbuf()->freeze(0);
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::SetInteractorWidgetSelector(
vtkVVInteractorWidgetSelector * i )
{
// TODO
// The method should really be replaced by the SetObjectMacro, so we know
// who's referencing what.. but I can't seem to get the Garbage collector
// to shut-up when reference counting loops, by overriding the
// ReportReferences method. (The InteractorWidgetSelector reference counts
// this class, this class is also supposed to maintain a reference to
// the InteractorWidgetSelector, but right now it does not. It just holds
// a raw pointer to it).
if (i != NULL && this->InteractorWidgetSelector != i )
{
this->InteractorWidgetSelector = i;
this->Modified();
}
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::SegmentationReplaceValueCallback( const char * )
{
if (!this->SegmentationReplaceValueEntry)
{
return;
}
this->ContourSegmentationFilter->SetReplaceValue(
this->SegmentationReplaceValueEntry->GetWidget()->GetValueAsDouble() );
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::SegmentationTypeCallback()
{
if (!this->SegmentationTypeMenuButton1 || !this->SegmentationTypeMenuButton2)
{
return;
}
const char *segmentOrientation =
this->SegmentationTypeMenuButton1->GetValue();
if (!strcmp(segmentOrientation, ks_("Segmentation|Outside")))
{
this->ContourSegmentationFilter->SegmentInsideOn();
}
else
{
this->ContourSegmentationFilter->SegmentInsideOff();
}
const char *segmentType =
this->SegmentationTypeMenuButton2->GetValue();
if (!strcmp(segmentType, ks_("Segmentation|Volume")))
{
this->ContourSegmentationFilter->SetSegmentationExtentToImageExtent();
}
else // Only on the slice
{
// slice by slice segmentation makes sense only for 2D widgets.
vtkKW2DRenderWidget *rw2d = vtkKW2DRenderWidget::SafeDownCast(
this->RenderWidget );
if (!rw2d)
{
return;
}
int segmentationExtent[6];
rw2d->GetSliceDisplayExtent( rw2d->GetSlice(), segmentationExtent );
this->ContourSegmentationFilter->SetSegmentationExtent( segmentationExtent );
}
}
//----------------------------------------------------------------------------
// Get the widget currently selected by the InteractorWidgetSelector, check
// if its a contour widget, get the contour representation from the widget,
// check if its closed, set the polydata and the render widget on which the
// contour was drawn (from which the image data, extent etc will be obtained)
// and segment.
//
void vtkContourSegmentationFrame::ContourSegmentCallback()
{
if (!this->InteractorWidgetSelector)
{
return;
}
vtkAbstractWidget *interactor = this->InteractorWidgetSelector->GetPresetInteractorWidget(this->InteractorWidgetSelector->GetIdOfSelectedPreset());
if (!interactor)
{
return;
}
vtkKWContourWidget *contour_widget =
vtkKWContourWidget::SafeDownCast(interactor);
if ( !contour_widget )
{
return;
}
vtkContourRepresentation *rep = vtkContourRepresentation::SafeDownCast(
contour_widget->GetRepresentation());
if ( rep && rep->GetClosedLoop() )
{
this->SetContourRepresentation( rep );
if ( !this->HasValidImageData || !this->HasValidPolyData )
{
this->EnableContourSegmentationGUI(0);
return;
}
if (this->PromptBeforeSegmentation && !this->DisplayWarningDialog() )
{
this->SetEnabled( 1 );
return;
}
// Disable the segmentation frame during and after the update. No sense in
// segmenting with the same contour twice unless the contour changes.
// NOTE: this is confusing, sorry.
// this->EnableContourSegmentationGUI(0);
// Set up progress reporting ..
vtkKWProgressCommand *cb = vtkKWProgressCommand::New();
cb->SetWindow( this->InteractorWidgetSelector->GetWindow() );
cb->SetStartMessage( "Segmenting.." ); // Do the internationalization.
cb->SetRetrieveProgressMethodToCallData();
this->ContourSegmentationFilter->AddObserver( vtkCommand::StartEvent, cb );
this->ContourSegmentationFilter->AddObserver( vtkCommand::ProgressEvent, cb );
this->ContourSegmentationFilter->AddObserver( vtkCommand::EndEvent, cb );
if (this->Segment()) // Does the actual segmentation
{
// Input has changed.. update relevant render widgets
vtkContourSegmentationFrame::UpdateRenderWidgetsUsingSelectedDataItem(
this->InteractorWidgetSelector->GetWindow() );
}
this->ContourSegmentationFilter->RemoveObserver(cb);
cb->Delete();
}
}
//---------------------------------------------------------------------------
int vtkContourSegmentationFrame::EnableContourSegmentationGUI( int enabled )
{
if ( enabled && this->RenderWidget )
{
// Activate the segmentation GUI
this->ExpandFrame();
this->SetEnabled(1);
// If the button is being enabled now, set reasonable defaults. Set the
// replace value as the min of the dataset.
if (!(this->SegmentationReplaceValueEntry->GetEnabled()))
{
this->SegmentationReplaceValueEntry->SetEnabled(1);
double *range = this->RenderWidget->GetInput()->GetScalarRange();
this->SegmentationReplaceValueEntry->GetWidget()->SetValueAsDouble(range[0]);
this->ContourSegmentationFilter->SetReplaceValue(range[0]);
}
// If the button is being enabled now, set reasonable defaults.
if ( !this->SegmentationTypeMenuButton1->GetEnabled() )
{
// Add buttons ..
this->SegmentationTypeMenuButton1->GetMenu()->DeleteAllItems();
this->SegmentationTypeMenuButton2->GetMenu()->DeleteAllItems();
this->EnableSupportedSegmentationOptions();
this->ContourSegmentationFilter->SegmentInsideOn();
this->ContourSegmentationFilter->SetSegmentationExtentToImageExtent();
}
this->SegmentButton->SetEnabled(1);
return 1;
}
this->SegmentationTypeMenuButton1->SetEnabled(0);
this->SegmentationTypeMenuButton2->SetEnabled(0);
this->SegmentationReplaceValueEntry->SetEnabled(0);
this->SegmentButton->SetEnabled(0);
this->SetEnabled(0);
return 0;
}
//---------------------------------------------------------------------------
// The following two methods set appropriate parameters for the segmentation
// filter. They use the vtkContourSegmentationFilter to do the segmentation.
//
// The inputs to the filter are slightly different depending on whether its
// drawn on the image/ oblique or volume widget. If drawn on the image widgets,
// the filter needs just the input data, the contour polydata and the
// ObtainSliceFromContourPolyDataOn() flag.
//
// If drawn on the oblique widget, the filter must be supplied with the resliced
// image along with its direction cosines in addition to the input image and
// contour.
//
// If drawn on the volume widget, the filter needs the direction cosines of the
// focal plane (the plane on which the contour lies on) in addition to the input
// image and contour polydata.
//
void vtkContourSegmentationFrame::SetRenderWidget( vtkKWRenderWidgetPro * rwp )
{
this->HasValidImageData = 0;
if (!vtkContourSegmentationFrame::RenderWidgetSupportSegmentation( rwp ))
{
this->RenderWidget = NULL;
return;
}
this->RenderWidget = rwp;
vtkKW2DRenderWidget *rw2d =
vtkKW2DRenderWidget::SafeDownCast( rwp );
vtkKWVolumeWidget *vw = vtkKWVolumeWidget::SafeDownCast( rwp );
// Drawn on the 2D widget
if (rw2d)
{
vtkKWImageMapToWindowLevelColors *imageMapToRGBA
= rw2d->GetImageMapToRGBA();
this->ContourSegmentationFilter->SetImage((vtkImageData *)
(rw2d->GetInput()));
this->ContourSegmentationFilter->SetInput((vtkImageData *)
(imageMapToRGBA->GetInput()));
// For the oblique probe,
//
// we must set the projection axes, for the
// other image widgets, the contour polydata can tell us the contour
// orientation. The ContourSegmentationFilter is not smart enough to
// determine the orientation of the contour from the polydata unless
// it lies along one of the axis aligned directions.
vtkKWProbeImageWidget *probeImage2DWidget =
vtkKWProbeImageWidget::SafeDownCast(rw2d);
if (probeImage2DWidget)
{
vtkImageReslice *reslice = probeImage2DWidget->GetImageReslice();
if (reslice)
{
this->ContourSegmentationFilter->SetStencilAxes(
reslice->GetResliceAxes());
this->ContourSegmentationFilter->ObtainOrientationFromContourPolyDataOff();
}
}
else
{
this->ContourSegmentationFilter->ObtainOrientationFromContourPolyDataOn();
}
}
else if (vw) // Contour drawn on the volume widget
{
this->ContourSegmentationFilter->SetInput( (vtkImageData *)
(vw->GetInput()));
this->ContourSegmentationFilter->SetImage( (vtkImageData *)
(vw->GetInput()));
this->ContourSegmentationFilter->ObtainOrientationFromContourPolyDataOff();
}
this->HasValidImageData = 1;
}
//---------------------------------------------------------------------------
// You should have called SetRenderWidget first.
void vtkContourSegmentationFrame::SetContourRepresentation(
vtkContourRepresentation *rep )
{
this->HasValidPolyData = 0;
if (!this->RenderWidget)
{
return;
}
vtkKW2DRenderWidget *rw2d =
vtkKW2DRenderWidget::SafeDownCast( this->RenderWidget );
vtkKWVolumeWidget *vw = vtkKWVolumeWidget::SafeDownCast( this->RenderWidget );
if (!rw2d && !vw) // Not a volume or image widget..
{
return;
}
// Drawn on the 2D widget
if (rw2d)
{
this->ContourSegmentationFilter->SetContourPolyData(
const_cast< vtkPolyData * >(rep->GetContourRepresentationAsPolyData()));
}
else if (vw) // Contour drawn on the volume widget
{
this->ContourSegmentationFilter->VolumetricProjectionOn();
this->ContourSegmentationFilter->SetRenderer( rep->GetRenderer() );
vtkOrientedGlyphFocalPlaneContourRepresentation *repogfp =
vtkOrientedGlyphFocalPlaneContourRepresentation::SafeDownCast(rep);
this->ContourSegmentationFilter->SetContourPolyData(
repogfp->GetContourRepresentationAsPolyData());
}
this->HasValidPolyData = 1;
}
//---------------------------------------------------------------------------
int vtkContourSegmentationFrame::Segment()
{
// Any vtkImageInPlaceFilter must Set the release data flag on its input to
// on, to prevent reallocation of data. See
// vtkImageInPlaceFilter::RequestData().
vtkImageData *image = this->ContourSegmentationFilter->GetImage();
if (image)
{
int old_flag = image->GetReleaseDataFlag();
image->ReleaseDataFlagOn();
this->ContourSegmentationFilter->Update();
// Get the output. The input is now gone.
vtkImageData *output = vtkImageData::SafeDownCast(
this->ContourSegmentationFilter->GetOutput());
if (!output)
{
vtkErrorMacro( << "Contour segmentation failed to generate any output !" );
}
//vtkMetaImageWriter *w = vtkMetaImageWriter::New();
//w->SetInput(output);
//w->SetFileName("segmentedImage.mha");
//w->Write();
image->ShallowCopy( output );
image->SetReleaseDataFlag(old_flag);
}
return 1;
}
//---------------------------------------------------------------------------
// Contours are supported on the image widgets and the oblique probe
//
int vtkContourSegmentationFrame::RenderWidgetSupportSegmentation(
vtkKWRenderWidgetPro * rwp)
{
if ( rwp &&
( vtkKWImageWidget::SafeDownCast( rwp )
// UNCOMMENT THIS LINE IF YOU WANT CONTOUR SEGMENTATION TO BE ENABLED
// ON THE VOLUME WIDGET
//
|| vtkKWVolumeWidget::SafeDownCast( rwp )
)
// COMMENT THIS LINE TO DISABLE IT ON THE OBLIQUE PROBE
//&& !vtkKWProbeImageWidget::SafeDownCast( rwp )
)
{
return 1;
}
return 0;
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::UpdateRenderWidgetsUsingSelectedDataItem(
vtkVVWindowBase * window)
{
// Once the filter runs, we need to update the render windows
// according to the segmented data. The ContourSegmentationFilter is
// a vtkInPlaceFilter, so the image_data ivar remains the same, hence
// we need to force an update.
int nb_rw = window->GetNumberOfRenderWidgetsUsingSelectedDataItem();
for (int i = 0; i < nb_rw; i++)
{
vtkKWRenderWidgetPro *rwp = vtkKWRenderWidgetPro::SafeDownCast(
window->GetNthRenderWidgetUsingSelectedDataItem(i));
if (!rwp)
{
return;
}
// For some wierd reason, the image widgets do not update their
// display when UpdateAccordingToInput() is called. Manually
// call Modified on the image data. Somethings wrong !
// TODO: The Histogram widget etc is still the old one.. needs
// to update itself...
if (vtkKWImageWidget::SafeDownCast(rwp))
{
rwp->GetInput()->Modified();
}
// Manually force the update.
rwp->UpdateAccordingToInput();
rwp->Render();
}
window->Update();
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::EnableSupportedSegmentationOptions()
{
if (!this->RenderWidget)
{
return;
}
if ( vtkContourSegmentationFrame::
RenderWidgetSupportSegmentation( this->RenderWidget ) )
{
this->SegmentationTypeMenuButton1->GetMenu()->AddRadioButton(
ks_("Segmentation|Outside"), this, "SegmentationTypeCallback");
this->SegmentationTypeMenuButton1->GetMenu()->AddRadioButton(
ks_("Segmentation|Inside"), this, "SegmentationTypeCallback");
this->SegmentationTypeMenuButton1->GetMenu()->SetBalloonHelpString(
k_("Inside sets pixels inside the contour to the replacement value. "
"Outside does the opposite."));
this->SegmentationTypeMenuButton1->SetValue(ks_("Segmentation|Outside"));
this->SegmentationTypeMenuButton1->SetEnabled(1);
}
else
{
this->SegmentationTypeMenuButton1->SetEnabled(0);
}
if ( vtkContourSegmentationFrame::
RenderWidgetSupportSegmentation( this->RenderWidget )
&& ( vtkKWProbeImageWidget::SafeDownCast( this->RenderWidget ) ||
vtkKWVolumeWidget::SafeDownCast( this->RenderWidget ) ) )
{
this->SegmentationTypeMenuButton2->GetMenu()->AddRadioButton(
ks_("Segmentation|Volume"));
this->SegmentationTypeMenuButton2->SetValue("Volume");
this->SegmentationTypeMenuButton2->SetEnabled(0);
this->SegmentationTypeMenuButton2->SetBalloonHelpString(
k_("Segments the entire volume via an extrusion along the normal to "
"the contour."));
}
else if ( vtkContourSegmentationFrame::
RenderWidgetSupportSegmentation( this->RenderWidget )
&& vtkKWImageWidget::SafeDownCast( this->RenderWidget ) )
{
this->SegmentationTypeMenuButton2->GetMenu()->AddRadioButton(
ks_("Segmentation|Volume"), this, "SegmentationTypeCallback");
this->SegmentationTypeMenuButton2->GetMenu()->AddRadioButton(
ks_("Segmentation|Slice"), this, "SegmentationTypeCallback");
this->SegmentationTypeMenuButton2->SetEnabled(1);
this->SegmentationTypeMenuButton2->SetValue( "Volume" );
this->SegmentationTypeMenuButton2->SetBalloonHelpString(
k_("'Volume' segments the entire volume via an extrusion along the "
"normal to the contour. 'Slice' restricts segmentation to the "
"current slice."));
}
else
{
this->SegmentationTypeMenuButton2->SetEnabled(0);
}
}
//----------------------------------------------------------------------------
int vtkContourSegmentationFrame::DisplayWarningDialog()
{
vtksys_stl::string title = this->GetLabel()->GetText();
vtksys_stl::string msg =
k_("This will modify the existing data. The only way to retrieve this "
"data is to reopen it using the File->Open dialog. Proceed ?");
vtkKWApplication *app =
this->InteractorWidgetSelector->GetWindow()->GetApplication();
vtkKWMessageDialog *dialog = vtkKWMessageDialog::New();
dialog->SetApplication(app);
dialog->SetStyleToYesNo();
dialog->SetMasterWindow(app->GetNthWindow(0));
dialog->SetOptions(
vtkKWMessageDialog::QuestionIcon |
vtkKWMessageDialog::RememberYes |
vtkKWMessageDialog::Beep |
vtkKWMessageDialog::YesDefault);
dialog->SetDialogName(
vtkContourSegmentationFrame::SegmentationWarningDialogName);
dialog->Create();
dialog->SetText(msg.c_str());
dialog->SetTitle(title.c_str());
int ret = dialog->Invoke();
dialog->Delete();
// This UI interface usually displays a checkbox offering the choice
// to prompt for exit or not. Update that UI.
for (int i = 0; i < app->GetNumberOfWindows(); i++)
{
app->GetNthWindow(i)->Update();
}
return ret;
}
//---------------------------------------------------------------------------
void vtkContourSegmentationFrame::PrintSelf(ostream& os, vtkIndent indent)
{
this->Superclass::PrintSelf(os,indent);
os << indent << "HasValidPolyData: " << this->HasValidPolyData << endl;
os << indent << "HasValidImageData: " << this->HasValidImageData << endl;
}
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