File: fmatch.xml

package info (click to toggle)
votca 2025.1-2
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 132,420 kB
  • sloc: xml: 345,964; cpp: 80,067; python: 15,957; sh: 4,580; perl: 2,169; javascript: 202; makefile: 34
file content (96 lines) | stat: -rw-r--r-- 1,940 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
<cg>
  <!-- fmatch section -->
  <fmatch>
    <!-- use constraint LS solver -->
    <constrainedLS>true</constrainedLS>
    <!-- Number of frames for block averaging -->
    <frames_per_block>5</frames_per_block>
  </fmatch>
  
  <bonded>
    <!-- name of the interaction -->
    <name>bond</name>
    <!-- fmatch specific stuff -->
    <min>0.0</min>
    <max>1.0</max>
	<step>0.001</step>
    <fmatch>
      <min>0.218</min>
      <max>0.28</max>
      <step>0.005</step>
      <out_step>0.001</out_step>
    </fmatch>
  </bonded>
  <bonded>
    <!-- name of the interaction -->
    <name>angle</name>
    <!-- fmatch specific stuff -->
    <min>0.0</min>
    <max>3.1415</max>
	<step>0.01</step>
    <fmatch>
      <min>1.6</min>
      <max>3.14</max>
      <step>0.05</step>
      <out_step>0.01</out_step>
    </fmatch>
  </bonded>
  
  <!-- example for a non-bonded interaction entry -->
  <non-bonded>
    <name>A-A</name>
    <type1>A</type1>
    <type2>A</type2>
    <min>0</min>
    <max>2.5</max>
    <step>0.01</step>
    <fmatch>
      <min>0.34</min>
      <max>1.0</max>
      <step>0.02</step>
      <out_step>0.01</out_step>
    </fmatch>
  </non-bonded>
  
  <non-bonded>
    <name>B-B</name>
    <type1>B</type1>
    <type2>B</type2>
    <min>0</min>
    <max>2</max>
    <step>0.01</step>
    <fmatch>
      <min>0.34</min>
      <max>1.2</max>
      <step>0.03</step>
      <out_step>0.01</out_step>
    </fmatch>
  </non-bonded>
  
  <non-bonded>
    <name>A-B</name>
    <type1>A</type1>
    <type2>B</type2>
    <min>0</min>
    <max>2</max>
    <step>0.01</step>
    <fmatch>
      <min>0.34</min>
      <max>1.0</max>
      <step>0.02</step>
      <out_step>0.01</out_step>
    </fmatch>
  </non-bonded>

  <!-- settings for gromacs .xvg table -->
  <inverse>
    <gromacs>
      <table_bins>0.001</table_bins>
      <pot_max>1000000</pot_max>
      <table_end>3.0</table_end>
    </gromacs>
  </inverse>



</cg>