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Source: vsearch
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>,
Étienne Mollier <emollier@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 13),
architecture-is-64-bit,
architecture-is-little-endian,
zlib1g-dev,
libbz2-dev,
libtext-markdown-perl,
ghostscript,
libsimde-dev [!amd64 !arm64 !ppc64el],
time
Standards-Version: 4.7.2
Vcs-Browser: https://salsa.debian.org/med-team/vsearch
Vcs-Git: https://salsa.debian.org/med-team/vsearch.git
Homepage: https://github.com/torognes/vsearch/
Rules-Requires-Root: no
Package: vsearch
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends}
Built-Using: ${simde:Built-Using}
Description: tool for processing metagenomic sequences
Versatile 64-bit multithreaded tool for processing metagenomic sequences,
including searching, clustering, chimera detection, dereplication, sorting,
masking and shuffling
.
The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010). The new tool should:
.
- have a 64-bit design that handles very large databases and much more
than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
Package: vsearch-examples
Architecture: all
Multi-Arch: foreign
Depends: ${shlibs:Depends},
${misc:Depends}
Enhances: vsearch
Description: Test Data for vsearch tool for processing metagenomic sequences
Versatile 64-bit multithreaded tool for processing metagenomic sequences,
including searching, clustering, chimera detection, dereplication, sorting,
masking and shuffling
.
The aim of this project is to create an alternative to the USEARCH tool
developed by Robert C. Edgar (2010). The new tool should:
.
- have a 64-bit design that handles very large databases and much more
than 4GB of memory
- be as accurate or more accurate than usearch
- be as fast or faster than usearch
.
This package contains a test data set as well as sample scripts
running some test suite provided by Debian also as autopkgtest.
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