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Source: vt
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Antoni Villalonga <antoni@friki.cat>
Build-Depends: debhelper-compat (= 13),
zlib1g-dev,
libbz2-dev,
liblzma-dev,
libcurl4-gnutls-dev,
libssl-dev,
libdeflate-dev,
libhts-dev,
libpcre2-dev,
libsvm-dev,
libtclap-dev,
r-mathlib,
r-base-core,
Standards-Version: 4.5.0
Homepage: https://genome.sph.umich.edu/wiki/Vt
Vcs-Browser: https://salsa.debian.org/med-team/vt
Vcs-Git: https://salsa.debian.org/med-team/vt.git
Rules-Requires-Root: no
Package: vt
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
r-base-core,
Description: toolset for short variant discovery in genetic sequence data
vt is a variant tool set that discovers short variants from Next Generation
Sequencing data.
.
Vt-normalize is a tool to normalize representation of genetic variants in
the VCF. Variant normalization is formally defined as the consistent
representation of genetic variants in an unambiguous and concise way. In
vt a simple general algorithm to enforce this is implemented.
Package: vt-examples
Architecture: all
Depends: ${misc:Depends},
Enhances: vt
Description: toolset for short variant discovery in genetic sequence data (examples)
vt is a variant tool set that discovers short variants from Next Generation
Sequencing data.
.
Vt-normalize is a tool to normalize representation of genetic variants in
the VCF. Variant normalization is formally defined as the consistent
representation of genetic variants in an unambiguous and concise way. In
vt a simple general algorithm to enforce this is implemented.
.
This package contains some example data.
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