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// MPI include
#include <mpi.h>
// VTK includes
#include "vtkCellData.h"
#include "vtkCellType.h"
#include "vtkDoubleArray.h"
#include "vtkExtentRCBPartitioner.h"
#include "vtkIdList.h"
#include "vtkIdTypeArray.h"
#include "vtkMPIController.h"
#include "vtkPointData.h"
#include "vtkStructuredData.h"
#include "vtkUnstructuredGrid.h"
#include "vtkUnstructuredGridWriter.h"
#include "UnstructuredGhostZonesCommon.h"
double global::Origin[3] = {0.0,0.0,0.0};
double global::Spacing[3] = {0.5,0.5,0.5};
int global::Dims[3] = {50,50,50};
int global::Rank = -1;
int global::NRanks = 0;
vtkUnstructuredGrid* global::Grid;
int CheckGrid(vtkUnstructuredGrid* ghostGrid, const int iteration)
{
int rc = 0;
int numOfErrors = 0;
std::ostringstream out;
std::ostringstream err;
vtkMPIController* cntrl =
vtkMPIController::SafeDownCast(
vtkMultiProcessController::GetGlobalController());
// check node fields by the iteration number
vtkDoubleArray* nodeXYZ =
vtkArrayDownCast<vtkDoubleArray>(
ghostGrid->GetPointData()->GetArray("NodeXYZ"));
assert("pre: nodeXYZ != NULL" && (nodeXYZ != NULL) );
assert("pre: nodeXYZ numtuples mismatch!" &&
(ghostGrid->GetNumberOfPoints()==nodeXYZ->GetNumberOfTuples()));
assert("pre: nodeXYZ numcomponents mismatch!" &&
(nodeXYZ->GetNumberOfComponents()==3));
out.str("");
err.str("");
double pnt[3];
double* ptr = static_cast<double*>(nodeXYZ->GetVoidPointer(0));
for(vtkIdType nodeIdx=0; nodeIdx < ghostGrid->GetNumberOfPoints(); ++nodeIdx)
{
ghostGrid->GetPoint(nodeIdx,pnt);
for(int dim=0; dim < 3; ++dim)
{
double actual = ptr[nodeIdx*3+dim];
double expected = pnt[dim]+static_cast<double>(iteration);
if( ! vtkMathUtilities::NearlyEqual<double>(actual,expected) )
{
++numOfErrors;
++rc;
err << std::setprecision(5)
<< "\t[ERROR]: value mismatch at node=" << nodeIdx
<< " expected=" << expected
<< " actual=" << actual
<< " delta=" << std::fabs(actual-expected)
<< std::endl;
} // END if
} // END for all dimensions
} // END for all nodes
out << "[INFO]: " << numOfErrors << "/" << ghostGrid->GetNumberOfPoints()
<< " nodes appear wrong: " << std::endl;
out << err.str();
vtkMPIUtilities::SynchronizedPrintf(cntrl,"%s",out.str().c_str());
// likewise, check cell-fields
vtkDoubleArray* cellXYZ =
vtkArrayDownCast<vtkDoubleArray>(
ghostGrid->GetCellData()->GetArray("CentroidXYZ"));
assert("pre: nodeXYZ numtuples mismatch!" &&
(ghostGrid->GetNumberOfCells()==cellXYZ->GetNumberOfTuples()));
assert("pre: nodeXYZ numcomponents mismatch!" &&
(cellXYZ->GetNumberOfComponents()==3));
numOfErrors = 0;
out.str("");
err.str("");
double centroid[3];
double* cptr = static_cast<double*>(cellXYZ->GetVoidPointer(0));
vtkIdList* ptIds = vtkIdList::New();
for(vtkIdType cellIdx=0; cellIdx < ghostGrid->GetNumberOfCells(); ++cellIdx)
{
ghostGrid->GetCellPoints(cellIdx,ptIds);
assert("pre: numpoints per cell must be 8!" &&
ptIds->GetNumberOfIds()==8);
centroid[0] = 0.0;
centroid[1] = 0.0;
centroid[2] = 0.0;
for(vtkIdType n=0; n < ptIds->GetNumberOfIds(); ++n)
{
vtkIdType idx = ptIds->GetId(n);
ghostGrid->GetPoint(idx,pnt);
centroid[0] += pnt[0];
centroid[1] += pnt[1];
centroid[2] += pnt[2];
} // END for all cell nodes
centroid[0] /= static_cast<double>(ptIds->GetNumberOfIds());
centroid[1] /= static_cast<double>(ptIds->GetNumberOfIds());
centroid[2] /= static_cast<double>(ptIds->GetNumberOfIds());
for(int dim=0; dim < 3; ++dim)
{
double actual = cptr[cellIdx*3+dim];
double expected = centroid[dim]+static_cast<double>(iteration);
if( ! vtkMathUtilities::NearlyEqual<double>(actual,expected) )
{
++numOfErrors;
++rc;
err << std::setprecision(5)
<< "\t[ERROR]: cell value mismatch at cell=" << cellIdx
<< " dimension=" << dim
<< " expected=" << expected
<< " actual=" << actual
<< " delta= " << std::fabs(actual-expected)
<< std::endl;
} // END if
} // END for all dimensions
} // END for all cells
out << "[INFO]: " << numOfErrors << "/" << ghostGrid->GetNumberOfCells()
<< " cells appear wrong: " << std::endl;
out << err.str();
vtkMPIUtilities::SynchronizedPrintf(cntrl,"%s",out.str().c_str());
ptIds->Delete();
return( rc );
}
//------------------------------------------------------------------------------
void UpdateGrid(const int iteration)
{
// increment node fields by the iteration number
vtkDoubleArray* nodeXYZ =
vtkArrayDownCast<vtkDoubleArray>(
global::Grid->GetPointData()->GetArray("NodeXYZ"));
assert("pre: nodeXYZ != NULL" && (nodeXYZ != NULL) );
assert("pre: nodeXYZ numtuples mismatch!" &&
(global::Grid->GetNumberOfPoints()==nodeXYZ->GetNumberOfTuples()));
assert("pre: nodeXYZ numcomponents mismatch!" &&
(nodeXYZ->GetNumberOfComponents()==3));
double* ptr = static_cast<double*>(nodeXYZ->GetVoidPointer(0));
for(vtkIdType nodeIdx=0; nodeIdx < global::Grid->GetNumberOfPoints(); ++nodeIdx)
{
ptr[ nodeIdx*3 ] += static_cast<double>(iteration);
ptr[ nodeIdx*3+1 ] += static_cast<double>(iteration);
ptr[ nodeIdx*3+2 ] += static_cast<double>(iteration);
} // END for all nodes
// increment cell fields by the iteration number
vtkDoubleArray* cellXYZ =
vtkArrayDownCast<vtkDoubleArray>(
global::Grid->GetCellData()->GetArray("CentroidXYZ"));
assert("pre: nodeXYZ numtuples mismatch!" &&
(global::Grid->GetNumberOfCells()==cellXYZ->GetNumberOfTuples()));
assert("pre: nodeXYZ numcomponents mismatch!" &&
(cellXYZ->GetNumberOfComponents()==3));
double* cptr = static_cast<double*>(cellXYZ->GetVoidPointer(0));
for(vtkIdType cellIdx=0; cellIdx < global::Grid->GetNumberOfCells(); ++cellIdx)
{
cptr[ cellIdx*3 ] += static_cast<double>(iteration);
cptr[ cellIdx*3+1 ] += static_cast<double>(iteration);
cptr[ cellIdx*3+2 ] += static_cast<double>(iteration);
} // END for all cells
}
//------------------------------------------------------------------------------
void SetXYZCellField()
{
vtkDoubleArray* centerXYZ = vtkDoubleArray::New();
centerXYZ->SetName("CentroidXYZ");
centerXYZ->SetNumberOfComponents(3);
centerXYZ->SetNumberOfTuples( global::Grid->GetNumberOfCells() );
double* ptr = static_cast<double*>(centerXYZ->GetVoidPointer(0));
double centroid[3];
vtkIdList* ptIds = vtkIdList::New();
for(vtkIdType cell=0; cell < global::Grid->GetNumberOfCells(); ++cell)
{
centroid[0] = centroid[1] = centroid[2] = 0.0;
global::Grid->GetCellPoints(cell,ptIds);
for(vtkIdType n=0; n < ptIds->GetNumberOfIds(); ++n)
{
centroid[0] += global::Grid->GetPoint(ptIds->GetId(n))[0];
centroid[1] += global::Grid->GetPoint(ptIds->GetId(n))[1];
centroid[2] += global::Grid->GetPoint(ptIds->GetId(n))[2];
} // END for all cell nodes
centroid[0] /= static_cast<double>(ptIds->GetNumberOfIds());
centroid[1] /= static_cast<double>(ptIds->GetNumberOfIds());
centroid[2] /= static_cast<double>(ptIds->GetNumberOfIds());
memcpy(&ptr[cell*3],centroid,3*sizeof(double));
} // END for all cells
global::Grid->GetCellData()->AddArray( centerXYZ );
centerXYZ->Delete();
ptIds->Delete();
}
//------------------------------------------------------------------------------
void SetXYZNodeField()
{
vtkDoubleArray* nodeXYZ = vtkDoubleArray::New();
nodeXYZ->SetName("NodeXYZ");
nodeXYZ->SetNumberOfComponents(3);
nodeXYZ->SetNumberOfTuples( global::Grid->GetNumberOfPoints() );
double* ptr = static_cast<double*>(nodeXYZ->GetVoidPointer(0));
for(vtkIdType node=0; node < global::Grid->GetNumberOfPoints(); ++node)
{
// copy the point coordinates in to the array
memcpy(&ptr[node*3],global::Grid->GetPoint(node),3*sizeof(double));
} // END for all cells
global::Grid->GetPointData()->AddArray(nodeXYZ);
nodeXYZ->Delete();
}
//------------------------------------------------------------------------------
void WriteDataSet(
vtkUnstructuredGrid* grid, const std::string& file)
{
std::ostringstream oss;
oss << file << "-" << global::Rank << ".vtk";
vtkUnstructuredGridWriter* writer = vtkUnstructuredGridWriter::New();
writer->SetFileName(oss.str().c_str());
writer->SetInputData( grid );
writer->Update();
writer->Delete();
}
//------------------------------------------------------------------------------
void GetPoint(
const int i, const int j, const int k,double pnt[3])
{
pnt[0] = global::Origin[0]+i*global::Spacing[0];
pnt[1] = global::Origin[1]+j*global::Spacing[1];
pnt[2] = global::Origin[2]+k*global::Spacing[2];
}
//------------------------------------------------------------------------------
// Some usefull extent macros
#define IMIN(ext) ext[0]
#define IMAX(ext) ext[1]
#define JMIN(ext) ext[2]
#define JMAX(ext) ext[3]
#define KMIN(ext) ext[4]
#define KMAX(ext) ext[5]
// Some useful IJK macros
#define I(ijk) ijk[0]
#define J(ijk) ijk[1]
#define K(ijk) ijk[2]
void GenerateDataSet()
{
// STEP 0: partition the global extent to the number of processes
vtkExtentRCBPartitioner* partitioner = vtkExtentRCBPartitioner::New();
partitioner->SetGlobalExtent(0,global::Dims[0]-1,0,global::Dims[1]-1,0,global::Dims[2]-1);
partitioner->SetNumberOfPartitions( global::NRanks );
partitioner->Partition();
// STEP 1: get the extent of this process
int ext[6];
partitioner->GetPartitionExtent(global::Rank,ext);
partitioner->Delete();
// STEP 2: Allocate the unstructured grid instance of this process
int dataDescription = vtkStructuredData::GetDataDescriptionFromExtent(ext);
int numNodes = vtkStructuredData::GetNumberOfPoints(ext,dataDescription);
int numCells = vtkStructuredData::GetNumberOfCells(ext,dataDescription);
int dims[3];
vtkStructuredData::GetDimensionsFromExtent(ext,dims,dataDescription);
vtkPoints* nodes = vtkPoints::New();
nodes->SetDataTypeToDouble();
nodes->SetNumberOfPoints(numNodes);
double* nodesPtr = static_cast<double*>(nodes->GetVoidPointer(0));
vtkIdTypeArray* globalIds = vtkIdTypeArray::New();
globalIds->SetName("GlobalID");
globalIds->SetNumberOfComponents(1);
globalIds->SetNumberOfTuples(numNodes);
vtkIdType* globalIdxPtr =
static_cast<vtkIdType*>(globalIds->GetVoidPointer(0));
global::Grid->Allocate(numCells,8);
// STEP 3: Loop through the extent assigned in this process and update
// the nodes and connectivity of the unstructured grid.
const int hexNodeOffSet[]= {
0, 0, 0,
1, 0, 0,
1, 1, 0,
0, 1, 0,
0, 0, 1,
1, 0, 1,
1, 1, 1,
0, 1, 1,
};
vtkIdType globalNodeIdx;
vtkIdType localNodeIdx;
vtkIdType cell[8];
for(int i=IMIN(ext); i < IMAX(ext); ++i)
{
for(int j=JMIN(ext); j < JMAX(ext); ++j)
{
for(int k=KMIN(ext); k < KMAX(ext); ++k)
{
// local ijk of the grid cell
int lijk[3];
I(lijk) = i-IMIN(ext);
J(lijk) = j-JMIN(ext);
K(lijk) = k-KMIN(ext);
for(int node=0; node < 8; ++node)
{
// local ijk of the node
int ijk[3];
I(ijk) = I(lijk)+hexNodeOffSet[node*3];
J(ijk) = J(lijk)+hexNodeOffSet[node*3+1];
K(ijk) = K(lijk)+hexNodeOffSet[node*3+2];
localNodeIdx =
vtkStructuredData::ComputePointId(dims,ijk,dataDescription);
cell[node] = localNodeIdx;
// global ijk of the node
int IJK[3];
I(IJK) = i+hexNodeOffSet[node*3];
J(IJK) = j+hexNodeOffSet[node*3+1];
K(IJK) = k+hexNodeOffSet[node*3+2];
globalNodeIdx =
vtkStructuredData::ComputePointId(global::Dims,IJK,dataDescription);
globalIdxPtr[localNodeIdx] = globalNodeIdx;
GetPoint(I(IJK),J(IJK),K(IJK),&nodesPtr[localNodeIdx*3]);
} // END for all nodes
global::Grid->InsertNextCell(VTK_HEXAHEDRON,8,cell);
} // END for all k
} // END for all j
} // END for all i
global::Grid->SetPoints(nodes);
nodes->Delete();
global::Grid->GetPointData()->AddArray(globalIds);
globalIds->Delete();
SetXYZCellField();
SetXYZNodeField();
}
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