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/*=========================================================================
Program: Visualization Toolkit
Module: TestRandomPOrderStatisticsMPI.cxx
Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
All rights reserved.
See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
This software is distributed WITHOUT ANY WARRANTY; without even
the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the above copyright notice for more information.
=========================================================================*/
/*
* Copyright 2011 Sandia Corporation.
* Under the terms of Contract DE-AC04-94AL85000, there is a non-exclusive
* license for use of this work by or on behalf of the
* U.S. Government. Redistribution and use in source and binary forms, with
* or without modification, are permitted provided that this Notice and any
* statement of authorship are reproduced on all copies.
*/
// .SECTION Thanks
// Thanks to Philippe Pebay for implementing this test.
#include <mpi.h>
#include "vtkOrderStatistics.h"
#include "vtkPOrderStatistics.h"
#include "vtkIdTypeArray.h"
#include "vtkIntArray.h"
#include "vtkMath.h"
#include "vtkMPIController.h"
#include "vtkMultiBlockDataSet.h"
#include "vtkStdString.h"
#include "vtkStringArray.h"
#include "vtkTable.h"
#include "vtkTimerLog.h"
#include "vtkVariantArray.h"
#include "vtksys/CommandLineArguments.hxx"
#include <map>
namespace
{
struct RandomOrderStatisticsArgs
{
int nVals;
double stdev;
bool skipInt;
bool skipString;
bool quantize;
int maxHistoSize;
int* retVal;
int ioRank;
};
// This will be called by all processes
void RandomOrderStatistics( vtkMultiProcessController* controller, void* arg )
{
// Get test parameters
RandomOrderStatisticsArgs* args = reinterpret_cast<RandomOrderStatisticsArgs*>( arg );
*(args->retVal) = 0;
// Get MPI communicator
vtkMPICommunicator* com = vtkMPICommunicator::SafeDownCast( controller->GetCommunicator() );
// Get local rank
int myRank = com->GetLocalProcessId();
// Seed random number generator
vtkMath::RandomSeed( static_cast<int>( vtkTimerLog::GetUniversalTime() ) * ( myRank + 1 ) );
// Generate an input table that contains samples of:
// 1. A truncated Gaussian pseudo-random variable (vtkIntArray)
// 2. A uniform pseudo-random variable of characters (vtkStringArray)
vtkStdString columnNames[] = { "Rounded Normal Integer", "Uniform Character" };
// Infer number and type of generated variables based on command line options
int nVariables = 0;
std::map<int,bool> isVariableAString;
if ( ! args->skipInt )
{
isVariableAString[nVariables] = false;
++ nVariables;
}
if ( ! args->skipString )
{
isVariableAString[nVariables] = true;
++ nVariables;
}
// Prepare column of integers
vtkIntArray* intArray = vtkIntArray::New();
intArray->SetNumberOfComponents( 1 );
intArray->SetName( columnNames[0] );
// Prepare column of strings
vtkStringArray* strArray = vtkStringArray::New();
strArray->SetNumberOfComponents( 1 );
strArray->SetName( columnNames[1] );
// Storage for pseudo-random values and local extrema
int* v = new int[nVariables];
int* min_l = new int[nVariables];
int* max_l = new int[nVariables];
// Initial current variable index
int idx = 0;
// Store first integer value
if ( ! args->skipInt )
{
v[idx] = static_cast<int>( vtkMath::Round( vtkMath::Gaussian() * args->stdev ) );
intArray->InsertNextValue( v[idx] );
++ idx;
}
// Store first string value
if ( ! args->skipString )
{
v[idx] = 96 + vtkMath::Ceil( vtkMath::Random() * 26 );
char c = static_cast<char>( v[idx] );
vtkStdString s( &c, 1 );
strArray->InsertNextValue( s );
}
// Initialize local extrema
for ( int i = 0; i < nVariables; ++ i )
{
min_l[i] = v[i];
max_l[i] = v[i];
}
// Continue up to nVals values have been generated
for ( int r = 1; r < args->nVals; ++ r )
{
// Initial current variable index
idx = 0;
// Store current integer value
if ( ! args->skipInt )
{
v[idx] = static_cast<int>( vtkMath::Round( vtkMath::Gaussian() * args->stdev ) );
intArray->InsertNextValue( v[idx] );
++ idx;
}
// Store current string value
if ( ! args->skipString )
{
v[idx] = 96 + vtkMath::Ceil( vtkMath::Random() * 26 );
char c = static_cast<char>( v[idx] );
vtkStdString s( &c, 1 );
strArray->InsertNextValue( s );
}
// Update local extrema
for ( int i = 0; i < nVariables; ++ i )
{
if ( v[i] < min_l[i] )
{
min_l[i] = v[i];
}
else if ( v[i] > max_l[i] )
{
max_l[i] = v[i];
}
} // i
} // r
// Create input table
vtkTable* inputData = vtkTable::New();
if ( ! args->skipInt )
{
inputData->AddColumn( intArray );
}
if ( ! args->skipString )
{
inputData->AddColumn( strArray );
}
// Storage for global extrema
int* min_g = new int[nVariables];
int* max_g = new int[nVariables];
// Reduce extrema for all variables
com->AllReduce( min_l,
min_g,
nVariables,
vtkCommunicator::MIN_OP );
com->AllReduce( max_l,
max_g,
nVariables,
vtkCommunicator::MAX_OP );
if ( myRank == args->ioRank )
{
cout << "\n## Generated pseudo-random samples with following ranges:\n";
for ( int i = 0; i < nVariables; ++ i )
{
cout << " "
<< columnNames[i]
<< ": ";
if ( isVariableAString[i] )
{
cout << static_cast<char>( min_g[i] )
<< " to "
<< static_cast<char>( max_g[i] );
}
else
{
cout << min_g[i]
<< " to "
<< max_g[i];
}
cout << "\n";
} // i
} // if ( myRank == args->ioRank )
// Clean up
delete [] v;
delete [] min_l;
delete [] max_l;
intArray->Delete();
strArray->Delete();
// ************************** Order Statistics **************************
// Synchronize and start clock
com->Barrier();
vtkTimerLog *timer=vtkTimerLog::New();
timer->StartTimer();
// Instantiate a parallel order statistics engine and set its ports
vtkPOrderStatistics* pos = vtkPOrderStatistics::New();
pos->SetInputData( vtkStatisticsAlgorithm::INPUT_DATA, inputData );
vtkMultiBlockDataSet* outputModelDS = vtkMultiBlockDataSet::SafeDownCast( pos->GetOutputDataObject( vtkStatisticsAlgorithm::OUTPUT_MODEL ) );
// Select columns of interest depending on command line choices
if ( ! args->skipInt )
{
pos->AddColumn( columnNames[0] );
}
if ( ! args->skipString )
{
pos->AddColumn( columnNames[1] );
}
// Test (in parallel) with Learn, Derive, and Assess options turned on
pos->SetLearnOption( true );
pos->SetDeriveOption( true );
pos->SetAssessOption( false );
pos->SetTestOption( false );
pos->SetQuantize( args->quantize );
pos->SetMaximumHistogramSize( args->maxHistoSize );
pos->Update();
// Synchronize and stop clock
com->Barrier();
timer->StopTimer();
if ( myRank == args->ioRank )
{
cout << "\n## Completed parallel calculation of order statistics (with assessment):\n"
<< " Wall time: "
<< timer->GetElapsedTime()
<< " sec.\n";
}
// If no variables were requested, terminate here (only made sure that empty input worked)
if ( ! nVariables )
{
pos->Delete();
inputData->Delete();
timer->Delete();
return;
}
// Now perform verifications
vtkTable* outputCard = vtkTable::SafeDownCast( outputModelDS->GetBlock( nVariables ) );
// Verify that all processes have the same grand total and histograms size
if ( myRank == args->ioRank )
{
cout << "\n## Verifying that all processes have the same grand total and histograms size.\n";
}
// Gather all cardinalities
int numProcs = controller->GetNumberOfProcesses();
int card_l = outputCard->GetValueByName( 0, "Cardinality" ).ToInt();
int* card_g = new int[numProcs];
com->AllGather( &card_l, card_g, 1 );
// Known global cardinality
int testIntValue = args->nVals * numProcs;
// Verify histogram cardinalities for each variable
for ( int i = 0; i < nVariables; ++ i )
{
if ( myRank == args->ioRank )
{
cout << " "
<< columnNames[i]
<< ":\n";
} // if ( myRank == args->ioRank )
vtkTable* outputHistogram = vtkTable::SafeDownCast( outputModelDS->GetBlock( i ) );
// Print out and verify all cardinalities
if ( myRank == args->ioRank )
{
for ( int p = 0; p < numProcs; ++ p )
{
cout << " On process "
<< p
<< ", cardinality = "
<< card_g[p]
<< ", histogram size = "
<< outputHistogram->GetNumberOfRows()
<< "\n";
if ( card_g[p] != testIntValue )
{
vtkGenericWarningMacro("Incorrect cardinality:"
<< card_g[p]
<< " <> "
<< testIntValue
<< ")");
*(args->retVal) = 1;
}
} // p
} // if ( myRank == args->ioRank )
} // i
// Print out and verify global extrema
vtkTable* outputQuantiles = vtkTable::SafeDownCast( outputModelDS->GetBlock( nVariables + 1 ) );
if ( myRank == args->ioRank )
{
cout << "\n## Verifying that calculated global ranges are correct:\n";
for ( int i = 0; i < nVariables; ++ i )
{
vtkVariant min_c = outputQuantiles->GetValue( 0,
i + 1 );
vtkVariant max_c = outputQuantiles->GetValue( outputQuantiles->GetNumberOfRows() - 1 ,
i + 1 );
// Print out computed range
cout << " "
<< columnNames[i]
<< ": "
<< min_c
<< " to "
<< max_c
<< "\n";
// Check minimum
if ( min_c.IsString() )
{
char c = static_cast<char>( min_g[i] );
if ( min_c.ToString() != vtkStdString( &c, 1 ) )
{
vtkGenericWarningMacro("Incorrect calculated minimum for variable "
<< columnNames[i]
<< ": "
<< min_c.ToString()
<< " <> "
<< vtkStdString( &c, 1 ) );
*(args->retVal) = 1;
}
} // if ( min_c.IsString() )
else
{
if ( min_c != min_g[i] )
{
vtkGenericWarningMacro("Incorrect calculated minimum for variable "
<< columnNames[i]
<< ": "
<< min_c
<< " <> "
<< min_g[i]);
*(args->retVal) = 1;
}
} // else
// Check maximum
if ( max_c.IsString() )
{
char c = static_cast<char>( max_g[i] );
if ( max_c.ToString() != vtkStdString( &c, 1 ) )
{
vtkGenericWarningMacro("Incorrect calculated maximum for variable "
<< columnNames[i]
<< ": "
<< max_c.ToString()
<< " <> "
<< vtkStdString( &c, 1 ) );
*(args->retVal) = 1;
}
}
else
{
if ( max_c != max_g[i] )
{
vtkGenericWarningMacro("Incorrect calculated maximum for variable "
<< columnNames[i]
<< ": "
<< max_c
<< " <> "
<< max_g[i]);
*(args->retVal) = 1;
} // ( max_c.IsString() )
} // else
} // i
} // if ( myRank == args->ioRank )
// Clean up
delete [] card_g;
delete [] min_g;
delete [] max_g;
pos->Delete();
inputData->Delete();
timer->Delete();
}
}
//----------------------------------------------------------------------------
int TestRandomPOrderStatisticsMPI( int argc, char* argv[] )
{
// **************************** MPI Initialization ***************************
vtkMPIController* controller = vtkMPIController::New();
controller->Initialize( &argc, &argv );
// If an MPI controller was not created, terminate in error.
if ( ! controller->IsA( "vtkMPIController" ) )
{
vtkGenericWarningMacro("Failed to initialize a MPI controller.");
controller->Delete();
return 1;
}
vtkMPICommunicator* com = vtkMPICommunicator::SafeDownCast( controller->GetCommunicator() );
// ************************** Find an I/O node ********************************
int* ioPtr;
int ioRank;
int flag;
MPI_Comm_get_attr( MPI_COMM_WORLD,
MPI_IO,
&ioPtr,
&flag );
if ( ( ! flag ) || ( *ioPtr == MPI_PROC_NULL ) )
{
// Getting MPI attributes did not return any I/O node found.
ioRank = MPI_PROC_NULL;
vtkGenericWarningMacro("No MPI I/O nodes found.");
// As no I/O node was found, we need an unambiguous way to report the problem.
// This is the only case when a testValue of -1 will be returned
controller->Finalize();
controller->Delete();
return -1;
}
else
{
if ( *ioPtr == MPI_ANY_SOURCE )
{
// Anyone can do the I/O trick--just pick node 0.
ioRank = 0;
}
else
{
// Only some nodes can do I/O. Make sure everyone agrees on the choice (min).
com->AllReduce( ioPtr,
&ioRank,
1,
vtkCommunicator::MIN_OP );
}
}
// **************************** Parse command line ***************************
// Set default argument values
int nVals = 100000;
bool skipInt = false;
bool skipString = false;
double stdev = 50.;
bool quantize = false;
int maxHistoSize = 500;
// Initialize command line argument parser
vtksys::CommandLineArguments clArgs;
clArgs.Initialize( argc, argv );
clArgs.StoreUnusedArguments( false );
// Parse per-process cardinality of each pseudo-random sample
clArgs.AddArgument("--n-per-proc",
vtksys::CommandLineArguments::SPACE_ARGUMENT,
&nVals, "Per-process cardinality of each pseudo-random sample");
// Parse whether integer variable should be skipped
clArgs.AddArgument("--skip-int",
vtksys::CommandLineArguments::NO_ARGUMENT,
&skipInt, "Skip integer variable");
// Parse whether string variable should be skipped
clArgs.AddArgument("--skip-string",
vtksys::CommandLineArguments::NO_ARGUMENT,
&skipString, "Skip string variable");
// Parse standard deviation of pseudo-random Gaussian sample
clArgs.AddArgument("--std-dev",
vtksys::CommandLineArguments::SPACE_ARGUMENT,
&stdev, "Standard deviation of pseudo-random Gaussian sample");
// Parse maximum histogram size
clArgs.AddArgument("--max-histo-size",
vtksys::CommandLineArguments::SPACE_ARGUMENT,
&maxHistoSize, "Maximum histogram size (when re-quantizing is allowed)");
// Parse whether quantization should be used (to reduce histogram size)
clArgs.AddArgument("--quantize",
vtksys::CommandLineArguments::NO_ARGUMENT,
&quantize, "Allow re-quantizing");
// If incorrect arguments were provided, provide some help and terminate in error.
if ( ! clArgs.Parse() )
{
if ( com->GetLocalProcessId() == ioRank )
{
cerr << "Usage: "
<< clArgs.GetHelp()
<< "\n";
}
controller->Finalize();
controller->Delete();
return 1;
}
// ************************** Initialize test *********************************
if ( com->GetLocalProcessId() == ioRank )
{
cout << "\n# Process "
<< ioRank
<< " will be the I/O node.\n";
}
// Parameters for regression test.
int testValue = 0;
RandomOrderStatisticsArgs args;
args.nVals = nVals;
args.stdev = stdev;
args.skipInt = skipInt;
args.skipString = skipString;
args.quantize = quantize;
args.maxHistoSize = maxHistoSize;
args.retVal = &testValue;
args.ioRank = ioRank;
// Check how many processes have been made available
int numProcs = controller->GetNumberOfProcesses();
if ( controller->GetLocalProcessId() == ioRank )
{
cout << "\n# Running test with "
<< numProcs
<< " processes and standard deviation = "
<< args.stdev
<< " for rounded Gaussian variable.\n";
}
// Execute the function named "process" on both processes
controller->SetSingleMethod( RandomOrderStatistics, &args );
controller->SingleMethodExecute();
// Clean up and exit
if ( com->GetLocalProcessId() == ioRank )
{
cout << "\n# Test completed.\n\n";
}
controller->Finalize();
controller->Delete();
return testValue;
}
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