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/*******************************************************************/
/* XDMF */
/* eXtensible Data Model and Format */
/* */
/* Id : Id */
/* Date : $Date$ */
/* Version : $Revision$ */
/* */
/* Author: */
/* Jerry A. Clarke */
/* clarke@arl.army.mil */
/* US Army Research Laboratory */
/* Aberdeen Proving Ground, MD */
/* */
/* Copyright @ 2002 US Army Research Laboratory */
/* All Rights Reserved */
/* See Copyright.txt or http://www.arl.hpc.mil/ice for details */
/* */
/* This software is distributed WITHOUT ANY WARRANTY; without */
/* even the implied warranty of MERCHANTABILITY or FITNESS */
/* FOR A PARTICULAR PURPOSE. See the above copyright notice */
/* for more information. */
/* */
/*******************************************************************/
#include "XdmfDataDesc.h"
#include <cstring>
#include <stdlib.h>
namespace xdmf2
{
XdmfDataDesc::XdmfDataDesc() {
#ifndef XDMF_MEMORY_DEBUG
H5dont_atexit();
#endif
this->DataSpace = H5I_BADID;
this->DataType = H5Tcopy(H5T_NATIVE_FLOAT);
this->SelectionType = XDMF_SELECTALL;
this->NextOffset = 0;
this->Rank = 1;
this->Compression = 0;
this->ShapeString = 0;
this->HeavyDataSetName = 0;
this->DsmBuffer = NULL;
}
XdmfDataDesc::~XdmfDataDesc() {
H5E_BEGIN_TRY {
H5Tclose( this->DataType );
if(( this->DataSpace != H5S_ALL ) &&
( this->DataSpace != H5I_BADID )){
H5Sclose( this->DataSpace );
this->DataSpace = H5I_BADID;
}
} H5E_END_TRY;
delete [] this->ShapeString;
delete [] this->HeavyDataSetName;
}
XdmfInt32
XdmfDataDesc::GetHyperSlab( XdmfInt64 *start, XdmfInt64 *stride, XdmfInt64 *count ) {
XdmfInt32 i, rank = this->Rank;
if( this->SelectionType != XDMF_HYPERSLAB ){
return( XDMF_FAIL );
}
for( i = 0 ; i < rank ; i++ ){
if( start ) {
*start++ = this->Start[i];
}
if( stride ) {
*stride++ = this->Stride[i];
}
if( count ) {
*count++ = this->Count[i];
}
}
return( rank );
}
XdmfConstString
XdmfDataDesc::GetHyperSlabAsString( void ){
ostrstream StringOutput;
XdmfString Ptr;
static XdmfString Result = NULL;
XdmfInt32 i, rank;
XdmfInt64 start[ XDMF_MAX_DIMENSION ];
XdmfInt64 stride[ XDMF_MAX_DIMENSION ];
XdmfInt64 count[ XDMF_MAX_DIMENSION ];
rank = this->GetHyperSlab( start, stride, count );
if( rank == XDMF_FAIL ) {
return( NULL );
}
for( i = 0 ; i < rank ; i++ ){
StringOutput << XDMF_64BIT_CAST start[i] << " ";
}
for( i = 0 ; i < rank ; i++ ){
StringOutput << XDMF_64BIT_CAST stride[i] << " ";
}
for( i = 0 ; i < rank ; i++ ){
StringOutput << XDMF_64BIT_CAST count[i] << " ";
}
StringOutput << ends;
Ptr = StringOutput.str();
if( Result != NULL ) delete [] Result;
Result = new char[ strlen( Ptr ) + 2 ];
strcpy( Result, Ptr );
delete [] Ptr;
return( Result );
}
XdmfInt32
XdmfDataDesc::CopySelection( XdmfDataDesc *Desc ){
if( Desc->SelectionType == XDMF_SELECTALL ) {
return( XDMF_SUCCESS );
}
if( Desc->GetSelectionType() == XDMF_HYPERSLAB ){
XdmfInt64 start[ XDMF_MAX_DIMENSION ];
XdmfInt64 stride[ XDMF_MAX_DIMENSION ];
XdmfInt64 count[ XDMF_MAX_DIMENSION ];
this->Rank = Desc->GetHyperSlab( start, stride, count );
this->SelectHyperSlab( start, stride, count );
} else {
XdmfInt64 NumberOfCoordinates;
XdmfInt64 *Coordinates;
NumberOfCoordinates = Desc->GetSelectionSize();
Coordinates = Desc->GetCoordinates();
this->SelectCoordinates( NumberOfCoordinates, Coordinates );
delete Coordinates;
}
return( XDMF_SUCCESS );
}
XdmfInt32
XdmfDataDesc::CopyShape( XdmfDataDesc *DataDesc ) {
XdmfInt32 Status;
Status = this->CopyShape( DataDesc->GetDataSpace() );
// Do This Manually
// if( Status == XDMF_SUCCESS ){
// Status = this->CopySelection( DataDesc );
// }
return( Status );
};
XdmfInt32
XdmfDataDesc::CopyType( hid_t dataType ) {
if( this->DataType != H5I_BADID ) {
H5Tclose( this->DataType );
}
this->DataType = H5Tcopy( dataType );
return( XDMF_SUCCESS );
}
XdmfInt32
XdmfDataDesc::CopyShape( hid_t dataSpace ) {
hsize_t i, HRank;
hsize_t HDimension[ XDMF_MAX_DIMENSION ];
XdmfInt64 Dimensions[ XDMF_MAX_DIMENSION ];
XdmfInt32 Status;
HRank = H5Sget_simple_extent_ndims( dataSpace );
H5Sget_simple_extent_dims( dataSpace, HDimension, NULL );
for( i = 0 ; i < HRank ; i++ ){
Dimensions[i] = HDimension[i];
}
Status = this->SetShape( HRank, Dimensions );
if( Status > 0 ){
return( XDMF_SUCCESS );
}
return( XDMF_FAIL );
}
XdmfInt32
XdmfDataDesc::GetShape( XdmfInt64 *Dimensions ) {
hsize_t i, HRank;
hsize_t HDimension[ XDMF_MAX_DIMENSION ];
HRank = H5Sget_simple_extent_ndims( this->DataSpace );
H5Sget_simple_extent_dims( this->DataSpace, HDimension, NULL );
for( i = 0 ; i < HRank ; i++ ){
Dimensions[i] = HDimension[i];
}
return( HRank );
}
XdmfConstString
XdmfDataDesc::GetShapeAsString( void ) {
ostrstream StringOutput;
XdmfInt64 i, rank, Dimensions[ XDMF_MAX_DIMENSION ];
rank = this->GetShape( Dimensions );
for( i = 0 ; i < rank - 1 ; i++ ){
StringOutput << XDMF_64BIT_CAST Dimensions[i] << " ";
}
StringOutput << XDMF_64BIT_CAST Dimensions[i] << ends;
this->SetShapeString(StringOutput.str());
StringOutput.rdbuf()->freeze(0);
return( this->ShapeString );
}
XdmfInt32
XdmfDataDesc::SetShape( XdmfInt32 rank, XdmfInt64 *Dimensions ) {
XdmfInt32 i;
hsize_t HRank;
hsize_t HDimension[ XDMF_MAX_DIMENSION ];
if( this->Rank <= 0 ) {
return( XDMF_FAIL );
}
if( ( this->DataSpace == H5I_BADID ) || ( this->DataSpace == H5S_ALL ) ) {
XdmfDebug("Createing new HDF5 DataSpace");
this->DataSpace = H5Screate( H5S_SIMPLE );
if( this->DataSpace < 0 ) {
XdmfErrorMessage( "Can't Create DataSpace" );
return( H5I_BADID );
}
} else {
HRank = H5Sget_simple_extent_ndims( this->DataSpace );
if( HRank != (hsize_t)rank ){
XdmfDebug( "Current Rank " << (int)HRank << " Requested Rank " << rank );
XdmfDebug( "Data Space Rank Change After Creation" );
// Work around for ?bug? in HDF
// when you increase rank
if(( this->DataSpace != H5S_ALL ) &&
( this->DataSpace != H5I_BADID )){
XdmfDebug("Closing Space");
H5Sclose( this->DataSpace );
this->DataSpace = H5I_BADID;
}
this->DataSpace = H5Screate( H5S_SIMPLE );
if( this->DataSpace < 0 ) {
XdmfErrorMessage( "Can't Create DataSpace" );
return( H5I_BADID );
}
}
}
this->Rank = HRank = rank;
XdmfDebug("Shape : Rank = " << (int)HRank);
for( i = 0 ; i < rank ; i++ ) {
XdmfDebug(" Dimension[" << i << "] = " << XDMF_64BIT_CAST Dimensions[i] );
this->Count[i] = this->Dimension[i] = HDimension[i] = Dimensions[i];
this->Start[i] = 0;
this->Stride[i] = 1;
}
H5Sset_extent_simple( this->DataSpace, HRank, HDimension, NULL );
H5Sselect_all( this->DataSpace );
XdmfDebug("Finished Setting Shape");
return( this->DataSpace );
}
XdmfInt32
XdmfDataDesc::SelectAll( void ) {
XdmfInt32 i;
// Update Rank and Dimensions
this->GetNumberOfElements();
for( i = 0 ; i < this->Rank ; i++ ) {
this->Start[i] = 0;
this->Stride[i] = 1;
this->Count[i] = this->Dimension[i];
}
H5Sselect_all( this->DataSpace );
this->SelectionType = XDMF_SELECTALL;
return( XDMF_SUCCESS );
}
XdmfInt32
XdmfDataDesc::SelectHyperSlab( XdmfInt64 *start, XdmfInt64 *stride, XdmfInt64 *count ) {
XdmfInt32 i;
XdmfInt64 Dimensions[ XDMF_MAX_DIMENSION ];
herr_t status;
this->GetShape( Dimensions );
for( i = 0 ; i < this->Rank ; i++ ) {
if( start ) {
this->Start[i] = start[ i ];
} else {
this->Start[i] = 0;
}
if( stride ){
this->Stride[i] = stride[ i ];
} else {
this->Stride[i] = 1;
}
if( count ) {
this->Count[i] = count[ i ];
} else {
this->Count[i] = (( Dimensions[i] - this->Start[i] - 1 ) / this->Stride[i]) + 1;
}
XdmfDebug("Dim[" << i << "] = " << XDMF_64BIT_CAST this->Dimension[i] <<
" Start Stride Count = " <<
XDMF_64BIT_CAST this->Start[i] << " " <<
XDMF_64BIT_CAST this->Stride[i] << " " <<
XDMF_64BIT_CAST this->Count[i] );
}
this->SelectionType = XDMF_HYPERSLAB;
status = H5Sselect_hyperslab( this->DataSpace,
H5S_SELECT_SET,
#if (H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&((H5_VERS_MINOR>6)||((H5_VERS_MINOR==6)&&(H5_VERS_RELEASE>=4))))
(const hsize_t *)this->Start, (const hsize_t *)this->Stride, (const hsize_t *)this->Count,
#else
(const hssize_t *)this->Start, (const hsize_t *)this->Stride, (const hsize_t *)this->Count,
#endif
NULL);
if( status >= 0 ) {
return( XDMF_SUCCESS );
}
return( XDMF_FAIL );
}
XdmfInt32
XdmfDataDesc::SelectCoordinates( XdmfInt64 NumberOfElements, XdmfInt64 *Coordinates ){
/*#if (H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&((H5_VERS_MINOR>6)||((H5_VERS_MINOR==6)&&(H5_VERS_RELEASE>=4))))
hsize_t *HCoordinates;
#else
*/
hssize_t *HCoordinates;
/*
#endif
*/
XdmfInt32 status;
XdmfInt64 i, rank = this->Rank;
hssize_t Length = NumberOfElements * rank;
hssize_t NElements = Length / MAX( 1, rank );
if( this->Rank <= 0 ) {
return( XDMF_FAIL );
}
this->SelectionType = XDMF_COORDINATES;
XdmfDebug(" Selecting " << (int)NElements << " elements" );
HCoordinates = new hssize_t[ Length ];
for( i = 0 ; i < Length ; i++ ){
HCoordinates[i] = Coordinates[i];
}
#if (H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&((H5_VERS_MINOR>6)||((H5_VERS_MINOR==6)&&(H5_VERS_RELEASE>=4))))
# if (H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&((H5_VERS_MINOR>6)||((H5_VERS_MINOR==6)&&(H5_VERS_RELEASE>=7))))
status = H5Sselect_elements( this->DataSpace,
H5S_SELECT_SET,
NElements,
( const hsize_t *)HCoordinates);
# else
status = H5Sselect_elements( this->DataSpace,
H5S_SELECT_SET,
NElements,
( const hsize_t **)HCoordinates);
# endif
#else
status = H5Sselect_elements( this->DataSpace,
H5S_SELECT_SET,
NElements,
( const hssize_t **)HCoordinates);
#endif
if( status < 0 ) {
return( XDMF_FAIL );
}
return ( XDMF_SUCCESS );
}
XdmfInt64
XdmfDataDesc::GetNumberOfElements( void ) {
hsize_t i, Dimensions[ XDMF_MAX_DIMENSION ];
XdmfInt64 Nelements = 0;
XdmfInt32 rank;
if(this->DataSpace == H5I_BADID) return(0);
this->Rank = rank = H5Sget_simple_extent_ndims(this->DataSpace );
H5Sget_simple_extent_dims( this->DataSpace, Dimensions, NULL );
if(rank) {
Nelements = this->Dimension[0] = Dimensions[0];
for( i = 1 ; i < (hsize_t)rank ; i++ ){
this->Dimension[i] = Dimensions[i];
Nelements *= Dimensions[i];
}
}
return( Nelements );
}
XdmfInt64
XdmfDataDesc::GetElementSize( void ) {
return( H5Tget_size( this->DataType ) );
}
XdmfInt64
XdmfDataDesc::GetSelectionSize( void ) {
return( H5Sget_select_npoints( this->DataSpace ) );
}
XdmfInt32
XdmfDataDesc::SelectHyperSlabFromString( XdmfConstString start, XdmfConstString stride, XdmfConstString count ) {
XdmfInt64 i, HStart[XDMF_MAX_DIMENSION], HStride[XDMF_MAX_DIMENSION], HCount[XDMF_MAX_DIMENSION];
istrstream Start_ist(const_cast<char*>(start), strlen( start ) );
istrstream stride_ist(const_cast<char*>(stride), strlen( stride ) );
istrstream Count_ist(const_cast<char*>(count), strlen( count ) );
for( i = 0 ; i < this->Rank ; i++ ){
if( start ){
XDMF_READ_STREAM64(Start_ist, HStart[i]);
} else {
HStart[i] = 0;
}
if( stride ){
XDMF_READ_STREAM64(stride_ist, HStride[i]);
} else {
HStride[i] = 1;
}
if( count ){
XDMF_READ_STREAM64(Count_ist, HCount[i]);
} else {
HCount[i] = (this->Dimension[i] - HStart[i]) / HStride[i];
}
}
return( this->SelectHyperSlab( HStart, HStride, HCount ) );
}
XdmfInt32
XdmfDataDesc::SetShapeFromString( XdmfConstString String ) {
XdmfLength i = 0, count = 0;
char* NewString = new char[ strlen(String) + 1 ];
strcpy(NewString, String);
istrstream ist(NewString, strlen( NewString ) );
istrstream counter(NewString, strlen( NewString ) );
XdmfInt64 dummy;
while( XDMF_READ_STREAM64(counter, dummy) ) count++;
this->Rank = count;
while( XDMF_READ_STREAM64(ist,dummy) ){
this->Dimension[i] = dummy;
i++;
}
delete [] NewString;
XdmfDebug("String Contains " << this->Rank << " Dimensions" );
return( this->SetShape( this->Rank, this->Dimension ) );
}
XdmfInt32
XdmfDataDesc::SelectCoordinatesFromString( XdmfConstString String ) {
XdmfInt32 Status;
XdmfLength i = 0, count = 0;
istrstream ist(const_cast<char*>(String), strlen( String ) );
istrstream counter(const_cast<char*>(String), strlen( String ) );
XdmfInt64 dummy, *Coordinates;
while( XDMF_READ_STREAM64(counter, dummy) ) count++;
Coordinates = new XdmfInt64[ count + 1 ];
while( XDMF_READ_STREAM64(ist, dummy) ){
Coordinates[i] = dummy;
i++;
}
XdmfDebug("String Contains " << XDMF_64BIT_CAST count << " Coordinates" );
Status = this->SelectCoordinates( count / this->Rank, Coordinates );
delete [] Coordinates;
return( Status );
}
XdmfInt32
XdmfDataDesc::SetNumberType( XdmfInt32 numberType, XdmfInt64 CompoundSize ) {
if( this->DataType != H5I_BADID ) {
H5Tclose( this->DataType );
}
if( numberType == XDMF_COMPOUND_TYPE ) {
this->DataType = H5Tcreate( H5T_COMPOUND, CompoundSize );
} else {
this->DataType = H5Tcopy( XdmfTypeToHDF5Type( numberType ) );
}
if ( this->DataType < 0 ) {
XdmfErrorMessage("Error Creating Data Type");
this->DataType = H5I_BADID;
return( XDMF_FAIL );
}
return( XDMF_SUCCESS );
}
XdmfInt32
XdmfDataDesc::SetNumberTypeFromString( XdmfConstString NumberTypeString, XdmfInt64 CompoundSize ) {
XdmfInt32 numberType;
numberType = StringToXdmfType( NumberTypeString );
return( this->SetNumberType( numberType, CompoundSize ) );
}
XdmfInt32
XdmfDataDesc::GetNumberType( void ) {
return( HDF5TypeToXdmfType( this->DataType ) );
}
XdmfConstString
XdmfDataDesc::GetNumberTypeAsString() {
XdmfInt32 Type;
Type = HDF5TypeToXdmfType( this->DataType );
if( Type > 0 ){
return( XdmfTypeToString( Type ) );
}
return("UNKNOWN");
}
XdmfInt64
XdmfDataDesc::GetNumberOfMembers( void ) {
return( H5Tget_nmembers( this->DataType ) );
}
XdmfInt32
XdmfDataDesc::GetMemberType( XdmfInt64 Index ) {
XdmfInt32 RetVal;
hid_t dataType;
if( Index > ( H5Tget_nmembers( this->DataType ) - 1 ) ){
XdmfErrorMessage("Index is Greater than Number of Members");
return( 0 );
}
dataType = H5Tget_member_type( this->DataType, Index );
RetVal = HDF5TypeToXdmfType( dataType );
if( RetVal == XDMF_COMPOUND_TYPE ) {
hid_t Super;
Super = H5Tget_super( dataType );
RetVal = HDF5TypeToXdmfType( Super );
}
H5Tclose( dataType );
return( RetVal );
}
XdmfConstString
XdmfDataDesc::GetMemberTypeAsString( XdmfInt64 Index ) {
return( XdmfTypeToString( this->GetMemberType( Index ) ) );
}
XdmfInt64
XdmfDataDesc::GetMemberOffset( XdmfInt64 Index ) {
XdmfInt64 RetVal;
if( Index > ( H5Tget_nmembers( this->DataType ) - 1 ) ){
XdmfErrorMessage("Index is Greater than Number of Members");
return( 0 );
}
RetVal = H5Tget_member_offset( this->DataType, Index );
return( RetVal );
}
XdmfInt32
XdmfDataDesc::GetMemberShape( XdmfInt64 Index, XdmfInt64 *Dimensions ) {
XdmfInt32 i, rank, dataType;
hsize_t Dims[XDMF_MAX_DIMENSION];
if( Index > ( H5Tget_nmembers( this->DataType ) - 1 ) ){
XdmfErrorMessage("Index is Greater than Number of Members");
return( 0 );
}
dataType = H5Tget_member_type( this->DataType, Index );
if( HDF5TypeToXdmfType(dataType) == XDMF_COMPOUND_TYPE ) {
rank = H5Tget_array_ndims( dataType );
if( rank <= 0 ){
H5Tclose(dataType);
return( XDMF_FAIL );
}
#if (H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&(H5_VERS_MINOR>=8))
H5Tget_array_dims2(dataType, Dims);
#else
H5Tget_array_dims(dataType, Dims, NULL );
#endif
for( i = 0 ; i < rank ; i++ ){
Dimensions[i] = Dims[i];
}
} else {
rank = 1;
Dimensions[0] = 1;
}
H5Tclose(dataType);
return( rank );
}
XdmfConstString
XdmfDataDesc::GetMemberShapeAsString( XdmfInt64 Index ){
static char ReturnString[ 80 ];
ostrstream ReturnStream( ReturnString, 80 );
XdmfInt64 Dimensions[XDMF_MAX_DIMENSION];
XdmfInt32 i, rank;
rank = this->GetMemberShape( Index, Dimensions );
if( rank == XDMF_FAIL ) {
XdmfErrorMessage("Error Getting Member Shape");
return( NULL );
}
ReturnString[0] = '0';
for( i = 0 ; i < rank ; i++ ){
ReturnStream << XDMF_64BIT_CAST Dimensions[i] << " ";
}
ReturnStream << ends;
return( ReturnString );
}
XdmfInt64
XdmfDataDesc::GetMemberLength( XdmfInt64 Index ) {
XdmfInt64 Length, Dimensions[XDMF_MAX_DIMENSION];
XdmfInt32 i, rank;
rank = this->GetMemberShape( Index, Dimensions );
if( rank == XDMF_FAIL ) {
XdmfErrorMessage("Error Getting Member Shape");
return( 0 );
}
Length = 1;
for( i = 0 ; i < rank ; i++ ){
Length *= Dimensions[i];
}
return( Length );
}
XdmfInt64
XdmfDataDesc::GetMemberSize( XdmfInt64 Index ) {
hsize_t Length;
XdmfInt64 RetVal = 1;
//hsize_t Dims[XDMF_MAX_DIMENSION];
if( Index > ( H5Tget_nmembers( this->DataType ) - 1 ) ){
XdmfErrorMessage("Index is Greater than Number of Members");
return( 0 );
}
hid_t dataType = H5Tget_member_type( this->DataType, Index );
Length = H5Tget_size(dataType);
H5Tclose(dataType);
if( Length <= 0 ){
XdmfErrorMessage("Error Getting Length");
RetVal = XDMF_FAIL;
} else {
RetVal = Length;
}
return( RetVal );
}
XdmfConstString
XdmfDataDesc::GetMemberName( XdmfInt64 Index ) {
XdmfString Name;
static char MemberName[256];
if( Index > ( H5Tget_nmembers( this->DataType ) - 1 ) ){
XdmfErrorMessage("Index is Greater than Number of Members");
return( NULL );
}
Name = H5Tget_member_name( this->DataType, Index );
strcpy( MemberName, Name );
free( Name );
return( MemberName );
}
XdmfInt32
XdmfDataDesc::AddCompoundMemberFromString( XdmfConstString Name,
XdmfConstString NumberTypeString,
XdmfConstString Shape,
XdmfInt64 Offset ){
XdmfInt32 i, rank = 0, numberType;
XdmfInt64 Dim, Dimensions[XDMF_MAX_DIMENSION];
istrstream istr( const_cast<char*>(Shape), strlen(Shape) );
numberType = StringToXdmfType( NumberTypeString );
i = 0;
while( XDMF_READ_STREAM64(istr, Dim) ){
rank++;
Dimensions[i++] = Dim;
}
return( this->AddCompoundMember( Name, numberType, rank, Dimensions, Offset) );
}
XdmfInt32
XdmfDataDesc::AddCompoundMember( XdmfConstString Name,
XdmfInt32 numberType,
XdmfInt32 rank,
XdmfInt64 *Dimensions,
XdmfInt64 Offset ){
herr_t status;
XdmfInt32 i, HNumberType;
XdmfInt64 One = 1;
XdmfInt64 Size;
if( Offset == 0 ){
Offset = this->NextOffset;
}
if( Dimensions == NULL ){
Dimensions = &One;
}
XdmfDebug("Inserting " << Name << " at Offset " << XDMF_64BIT_CAST Offset << " as type " << XdmfTypeToString( numberType ) );
if( this->GetNumberType() != XDMF_COMPOUND_TYPE ){
this->SetNumberType( XDMF_COMPOUND_TYPE );
}
HNumberType = XdmfTypeToHDF5Type( numberType);
Size = H5Tget_size( HNumberType );
if( ( rank == 1 ) && ( *Dimensions == 1 ) ){
status = H5Tinsert( this->DataType,
Name,
Offset,
HNumberType );
} else {
hsize_t Dims[ XDMF_MAX_DIMENSION ];
for( i = 0; i < rank ; i++ ){
Dims[i] = Dimensions[i];
}
status = H5Tinsert( this->DataType,
Name,
Offset,
#if (!H5_USE_16_API && ((H5_VERS_MAJOR>1)||((H5_VERS_MAJOR==1)&&(H5_VERS_MINOR>=8))))
H5Tarray_create( HNumberType, rank, Dims));
#else
H5Tarray_create( HNumberType, rank, Dims, NULL ));
#endif
}
if( status < 0 ){
return( XDMF_FAIL );
}
for( i = 0 ; i < rank ; i++ ){
Size *= Dimensions[i];
}
this->NextOffset += Size;
return( XDMF_SUCCESS );
}
XdmfConstString
XdmfDataDesc::GetSelectionTypeAsString( void ) {
switch( this->SelectionType ) {
case XDMF_HYPERSLAB :
return("XDMF_HYPERSLAB");
break;
case XDMF_COORDINATES :
return("XDMF_COORDINATES");
break;
default :
return( "Unknown" );
break;
}
}
XdmfInt64 *
XdmfDataDesc::GetCoordinates( XdmfInt64 start, XdmfInt64 Nelements ){
XdmfInt64 i, Total, *Coordinates = NULL;
XdmfInt32 rank = H5Sget_simple_extent_ndims(this->DataSpace );
if( this->SelectionType == XDMF_COORDINATES ){
hsize_t *HCoordinates;
if( Nelements <= 0 ){
Nelements = H5Sget_select_elem_npoints( this->DataSpace );
}
if ( Nelements > 0 ) {
Total = Nelements * rank;
HCoordinates = new hsize_t[ Total ];
Coordinates = new XdmfInt64[ Total ];
H5Sget_select_elem_pointlist( this->DataSpace, start, Nelements, HCoordinates);
for( i = 0 ; i < Total ; i++ ){
Coordinates[i] = HCoordinates[i];
}
delete HCoordinates;
}
}
return( Coordinates );
}
XdmfConstString
XdmfDataDesc::GetCoordinatesAsString( XdmfInt64 start, XdmfInt64 Nelements ){
hsize_t i;
XdmfInt32 rank = H5Sget_simple_extent_ndims(this->DataSpace );
ostrstream StringOutput;
XdmfString Ptr;
static XdmfString Result = NULL;
if( this->SelectionType == XDMF_COORDINATES ){
if( Nelements <= 0 ){
Nelements = H5Sget_select_elem_npoints( this->DataSpace );
}
if ( Nelements > 0 ) {
hsize_t *Coords = new hsize_t[ Nelements * rank ];
hsize_t j, *Cp = Coords;
H5Sget_select_elem_pointlist( this->DataSpace, start, Nelements, Coords );
for( i = 0 ; i < (hsize_t)Nelements ; i++ ){
for( j = 0 ; j < (hsize_t)rank ; j++ ){
StringOutput << (int)*Cp++ << " ";
}
}
delete [] Coords;
}
}
Ptr = StringOutput.str();
if( Result != NULL ) delete [] Result;
Result = new char[ strlen( Ptr ) + 2 ];
strcpy( Result, Ptr );
delete [] Ptr;
return( Result );
}
void
XdmfDataDesc::Print( void ){
hsize_t i, Dimensions[ XDMF_MAX_DIMENSION ];
hsize_t Nelements = 0;
XdmfInt32 rank = 0;
if ( this->DataSpace != H5I_BADID ) {
rank = H5Sget_simple_extent_ndims(this->DataSpace );
}
cout << "Rank " << rank << endl;
if ( this->DataSpace != H5I_BADID ) {
H5Sget_simple_extent_dims( this->DataSpace, Dimensions, NULL );
}
XdmfInt32 ii;
for( ii = 0 ; ii < rank ; ii++ ) {
cout << "Dimension[" << (int)ii << "] " << (int)Dimensions[ii] << endl;
}
cout << "Selection Type : " << this->GetSelectionTypeAsString() << endl;
if( this->SelectionType == XDMF_COORDINATES ){
if ( this->DataSpace != H5I_BADID ) {
Nelements = H5Sget_select_elem_npoints( this->DataSpace );
}
cout << "Selected Elements : " << (int)Nelements << endl;
if ( Nelements > 0 ) {
hsize_t *Coords = new hsize_t[ Nelements * rank ];
hsize_t j, *Cp = Coords;
H5Sget_select_elem_pointlist( this->DataSpace, 0, Nelements, Coords );
for( i = 0 ; i < Nelements ; i++ ){
cout << "Element[" << (int)i << "] ";
for( j = 0 ; j < (hsize_t)rank ; j++ ){
cout << " " << (int)*Cp++;
}
cout << endl;
}
delete [] Coords;
}
}
if( this->SelectionType == XDMF_HYPERSLAB ){
int k;
for( k = 0 ; k < rank ; k++ ){
cout << k << " : Start " << (int)this->Start[k] << " Stride " <<
(int)this->Stride[k] << " Count " << (int)this->Count[k] << endl;
}
}
}
void XdmfDataDesc::SetShapeString(XdmfConstString shape)
{
if ( shape == this->ShapeString ||
( shape && this->ShapeString && strcmp(shape, this->ShapeString) == 0 ) )
{
return;
}
if ( this->ShapeString )
{
delete [] this->ShapeString;
this->ShapeString = 0;
}
if ( shape )
{
this->ShapeString = new char[ strlen(shape) + 1 ];
strcpy(this->ShapeString, shape);
}
}
}
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