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import sys
try:
import numpy
except ImportError:
print("Numpy (http://numpy.scipy.org) not found.")
print("This test requires numpy!")
sys.exit(0)
import vtk
import vtk.numpy_interface.dataset_adapter as dsa
import vtk.numpy_interface.algorithms as algs
w = vtk.vtkRTAnalyticSource()
bp = vtk.vtkBrownianPoints()
bp.SetInputConnection(w.GetOutputPort())
bp.Update()
elev = vtk.vtkElevationFilter()
elev.SetInputConnection(bp.GetOutputPort())
elev.SetLowPoint(-10, 0, 0)
elev.SetHighPoint(10, 0, 0)
elev.SetScalarRange(0, 20)
g = vtk.vtkMultiBlockDataGroupFilter()
g.AddInputConnection(elev.GetOutputPort())
g.AddInputConnection(elev.GetOutputPort())
g.Update()
elev2 = vtk.vtkElevationFilter()
elev2.SetInputConnection(bp.GetOutputPort())
elev2.SetLowPoint(0, -10, 0)
elev2.SetHighPoint(0, 10, 0)
elev2.SetScalarRange(0, 20)
g2 = vtk.vtkMultiBlockDataGroupFilter()
g2.AddInputConnection(elev2.GetOutputPort())
g2.AddInputConnection(elev2.GetOutputPort())
g2.Update()
elev3 = vtk.vtkElevationFilter()
elev3.SetInputConnection(bp.GetOutputPort())
elev3.SetLowPoint(0, 0, -10)
elev3.SetHighPoint(0, 0, 10)
elev3.SetScalarRange(0, 20)
elev3.Update()
dobj = vtk.vtkImageData()
dobj.DeepCopy(elev3.GetOutput())
ds1 = dsa.WrapDataObject(dobj)
elev_copy = numpy.copy(ds1.PointData['Elevation'])
elev_copy[1] = numpy.nan
ghosts = numpy.zeros(ds1.GetNumberOfPoints(), dtype=numpy.uint8)
ghosts[1] = vtk.vtkDataSetAttributes.DUPLICATEPOINT
ds1.PointData.append(ghosts, vtk.vtkDataSetAttributes.GhostArrayName())
assert algs.make_point_mask_from_NaNs(ds1, elev_copy)[1] == vtk.vtkDataSetAttributes.DUPLICATEPOINT | vtk.vtkDataSetAttributes.HIDDENPOINT
cell_array = numpy.zeros(ds1.GetNumberOfCells())
cell_array[1] = numpy.nan
assert algs.make_cell_mask_from_NaNs(ds1, cell_array)[1] == vtk.vtkDataSetAttributes.HIDDENCELL
g3 = vtk.vtkMultiBlockDataGroupFilter()
g3.AddInputConnection(elev3.GetOutputPort())
g3.AddInputConnection(elev3.GetOutputPort())
g3.Update()
cd = dsa.CompositeDataSet(g.GetOutput())
randomVec = cd.PointData['BrownianVectors']
elev = cd.PointData['Elevation']
cd2 = dsa.CompositeDataSet(g2.GetOutput())
elev2 = cd2.PointData['Elevation']
cd3 = dsa.CompositeDataSet(g3.GetOutput())
elev3 = cd3.PointData['Elevation']
npa = randomVec.Arrays[0]
def compare(arr, tol):
assert algs.all(algs.abs(arr) < tol)
# Test operators
compare(1 + randomVec - 1 - randomVec, 1E-4)
assert (1 + randomVec).DataSet is randomVec.DataSet
# Test slicing and indexing
compare(randomVec[randomVec[:,0] > 0.2].Arrays[0] - npa[npa[:,0] > 0.2], 1E-7)
compare(randomVec[algs.where(randomVec[:,0] > 0.2)].Arrays[0] - npa[numpy.where(npa[:,0] > 0.2)], 1E-7)
compare(randomVec[dsa.VTKCompositeDataArray([(slice(None, None, None), slice(0,2,None)), 2])].Arrays[0] - npa[:, 0:2], 1E-6)
# Test ufunc
compare(algs.cos(randomVec) - numpy.cos(npa), 1E-7)
assert algs.cos(randomVec).DataSet is randomVec.DataSet
# Various numerical ops implemented in VTK
g = algs.gradient(elev)
assert algs.all(g[0] == (1, 0, 0))
v = algs.make_vector(elev, g[:,0], elev)
assert algs.all(algs.gradient(v) == [[1, 0, 1], [0, 0, 0], [0, 0, 0]])
v = algs.make_vector(elev, g[:,0], elev2)
assert algs.all(algs.curl(v) == [1, 0, 0])
v = algs.make_vector(elev, elev2, 2*elev3)
g = algs.gradient(v)
assert g.DataSet is v.DataSet
assert algs.all(algs.det(g) == 2)
assert algs.all(algs.eigenvalue(g) == [2, 1, 1])
assert algs.all(randomVec[:,0] == randomVec[:,0])
int_array1 = numpy.array([1, 0, 1], dtype=numpy.int)
int_array2 = numpy.array([0, 1, 0], dtype=numpy.int)
assert algs.all(algs.bitwise_or(int_array1, int_array2) == 1)
assert algs.all(algs.bitwise_or(int_array1, dsa.NoneArray) == int_array1)
assert algs.all(algs.bitwise_or(dsa.NoneArray, int_array1) == int_array1)
comp_array1 = dsa.VTKCompositeDataArray([int_array1, int_array2])
comp_array2 = dsa.VTKCompositeDataArray([int_array2, int_array1])
comp_array3 = dsa.VTKCompositeDataArray([int_array2, dsa.NoneArray])
assert algs.all(algs.bitwise_or(comp_array1, comp_array2) == 1)
assert algs.all(algs.bitwise_or(comp_array1, dsa.NoneArray) == comp_array1)
assert algs.all(algs.bitwise_or(dsa.NoneArray, comp_array1) == comp_array1)
assert algs.all(algs.bitwise_or(comp_array1, comp_array3) == dsa.VTKCompositeDataArray([algs.bitwise_or(int_array1, int_array2), int_array2]))
ssource = vtk.vtkSphereSource()
ssource.Update()
output = ssource.GetOutput()
fd = vtk.vtkFloatArray()
fd.SetNumberOfTuples(11)
fd.FillComponent(0, 5)
fd.SetName("field array")
output.GetFieldData().AddArray(fd)
g2 = vtk.vtkMultiBlockDataGroupFilter()
g2.AddInputData(output)
g2.AddInputData(output)
g2.Update()
sphere = dsa.CompositeDataSet(g2.GetOutput())
vn = algs.vertex_normal(sphere)
compare(algs.mag(vn) - 1, 1E-6)
sn = algs.surface_normal(sphere)
compare(algs.mag(sn) - 1, 1E-6)
dot = algs.dot(vn, vn)
assert dot.DataSet is sphere
compare(dot - 1, 1E-6)
assert algs.all(algs.cross(vn, vn) == [0, 0, 0])
fd = sphere.FieldData['field array']
assert algs.all(fd == 5)
assert algs.shape(fd) == (22,)
assert vn.DataSet is sphere
# --------------------------------------
na = dsa.NoneArray
# Test operators
assert (1 + na - 1 - randomVec) is na
# Test slicing and indexing
assert na[:, 0] is na
assert algs.where(na[:, 0] > 0) is na
assert (na > 0) is na
# Test ufunc
assert algs.cos(na) is na
# Various numerical ops implemented in VTK
assert algs.gradient(na) is na
assert algs.cross(na, na) is na
assert algs.cross(v.Arrays[0], na) is na
assert algs.cross(na, v.Arrays[0]) is na
assert algs.make_vector(na, g[:,0], elev) is na
pd = vtk.vtkPolyData()
pdw = dsa.WrapDataObject(pd)
pdw.PointData.append(na, 'foo')
assert pdw.PointData.GetNumberOfArrays() == 0
# --------------------------------------
na2 = dsa.VTKCompositeDataArray([randomVec.Arrays[0], na])
# Test operators
assert (1 + na2 - 1 - randomVec).Arrays[1] is na
# Test slicing and indexing
assert na2[:, 0].Arrays[1] is na
assert algs.where(na2[:, 0] > 0).Arrays[1] is na
assert (na2 > 0).Arrays[1] is na
# Test ufunc
assert algs.cos(na2).Arrays[1] is na
# Various numerical ops implemented in VTK
assert algs.gradient(na2).Arrays[1] is na
assert algs.cross(na2, na2).Arrays[1] is na
assert algs.cross(v, na2).Arrays[1] is na
assert algs.cross(na2, v).Arrays[1] is na
assert algs.make_vector(na2[:, 0], elev, elev).Arrays[1] is na
assert algs.make_vector(elev, elev, na2[:, 0]).Arrays[1] is na
assert algs.make_vector(elev, na2[:, 0], elev).Arrays[1] is na
mb = vtk.vtkMultiBlockDataSet()
mb.SetBlock(0, pd)
pd2 = vtk.vtkPolyData()
mb.SetBlock(1, pd2)
mbw = dsa.WrapDataObject(mb)
mbw.PointData.append(dsa.NoneArray, 'foo')
assert mbw.GetBlock(0).GetPointData().GetNumberOfArrays() == 0
assert mbw.GetBlock(1).GetPointData().GetNumberOfArrays() == 0
mbw.PointData.append(na2, 'foo')
assert mbw.GetBlock(0).GetPointData().GetNumberOfArrays() == 1
assert mbw.GetBlock(1).GetPointData().GetNumberOfArrays() == 0
assert mbw.GetBlock(0).GetPointData().GetArray(0).GetName() == 'foo'
mbw.PointData.append(algs.max(na2), "maxfoo")
assert mbw.GetBlock(0).GetPointData().GetNumberOfArrays() == 2
assert mbw.GetBlock(1).GetPointData().GetNumberOfArrays() == 1
assert mbw.GetBlock(0).GetPointData().GetArray(1).GetName() == 'maxfoo'
# --------------------------------------
mb = vtk.vtkMultiBlockDataSet()
mb.SetBlock(0, vtk.vtkImageData())
mb.SetBlock(1, vtk.vtkImageData())
assert dsa.WrapDataObject(mb).Points is na
mb = vtk.vtkMultiBlockDataSet()
mb.SetBlock(0, vtk.vtkStructuredGrid())
mb.SetBlock(1, vtk.vtkImageData())
assert dsa.WrapDataObject(mb).Points is na
mb = vtk.vtkMultiBlockDataSet()
sg = vtk.vtkStructuredGrid()
sg.SetPoints(vtk.vtkPoints())
mb.SetBlock(0, sg)
mb.SetBlock(1, vtk.vtkImageData())
assert dsa.WrapDataObject(mb).Points.Arrays[0] is not na
assert dsa.WrapDataObject(mb).Points.Arrays[1] is na
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