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// SPDX-FileCopyrightText: Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
// SPDX-FileCopyrightText: Copyright 2008 Sandia Corporation
// SPDX-License-Identifier: LicenseRef-BSD-3-Clause-Sandia-LANL-California-USGov
/**
* @class vtkNetCDFCFReader
*
*
*
* Reads netCDF files that follow the CF convention. Details on this convention
* can be found at <http://cf-pcmdi.llnl.gov/>.
*
*/
#ifndef vtkNetCDFCFReader_h
#define vtkNetCDFCFReader_h
#include "vtkIONetCDFModule.h" // For export macro
#include "vtkNetCDFReader.h"
#include "vtkStdString.h" // Used for ivars.
VTK_ABI_NAMESPACE_BEGIN
class vtkImageData;
class vtkPoints;
class vtkRectilinearGrid;
class vtkStructuredGrid;
class vtkUnstructuredGrid;
class VTKIONETCDF_EXPORT vtkNetCDFCFReader : public vtkNetCDFReader
{
public:
vtkTypeMacro(vtkNetCDFCFReader, vtkNetCDFReader);
static vtkNetCDFCFReader* New();
void PrintSelf(ostream& os, vtkIndent indent) override;
///@{
/**
* If on (the default), then 3D data with latitude/longitude dimensions
* will be read in as curvilinear data shaped like spherical coordinates.
* If false, then the data will always be read in Cartesian coordinates.
*/
vtkGetMacro(SphericalCoordinates, vtkTypeBool);
vtkSetMacro(SphericalCoordinates, vtkTypeBool);
vtkBooleanMacro(SphericalCoordinates, vtkTypeBool);
///@}
///@{
/**
* The scale and bias of the vertical component of spherical coordinates. It
* is common to write the vertical component with respect to something other
* than the center of the sphere (for example, the surface). In this case, it
* might be necessary to scale and/or bias the vertical height. The height
* will become height*scale + bias. Keep in mind that if the positive
* attribute of the vertical dimension is down, then the height is negated.
* By default the scale is 1 and the bias is 0 (that is, no change). The
* scaling will be adjusted if it results in invalid (negative) vertical
* values.
*/
vtkGetMacro(VerticalScale, double);
vtkSetMacro(VerticalScale, double);
vtkGetMacro(VerticalBias, double);
vtkSetMacro(VerticalBias, double);
///@}
///@{
/**
* Set/get the data type of the output. The index used is taken from the list
* of VTK data types in vtkType.h. Valid types are VTK_IMAGE_DATA,
* VTK_RECTILINEAR_GRID, VTK_STRUCTURED_GRID, and VTK_UNSTRUCTURED_GRID. In
* addition you can set the type to -1 (the default), and this reader will
* pick the data type best suited for the dimensions being read.
*/
vtkGetMacro(OutputType, int);
virtual void SetOutputType(int type);
void SetOutputTypeToAutomatic() { this->SetOutputType(-1); }
void SetOutputTypeToImage() { this->SetOutputType(VTK_IMAGE_DATA); }
void SetOutputTypeToRectilinear() { this->SetOutputType(VTK_RECTILINEAR_GRID); }
void SetOutputTypeToStructured() { this->SetOutputType(VTK_STRUCTURED_GRID); }
void SetOutputTypeToUnstructured() { this->SetOutputType(VTK_UNSTRUCTURED_GRID); }
///@}
/**
* Returns true if the given file can be read.
*/
static int CanReadFile(VTK_FILEPATH const char* filename);
///@{
/**
* Names for Time, Latitude, Longitude and Vertical which can be set by
* the user for datasets that don't use the proper CF attributes
*/
void SetTimeDimensionName(const char* name);
void SetLatitudeDimensionName(const char* name);
void SetLongitudeDimensionName(const char* name);
void SetVerticalDimensionName(const char* name);
///@}
///@{
/**
* Names for Time, Latitude, Longitude and Vertical. These are either
* deduced from CF attributes or overwritten by the user
*/
const char* GetTimeDimensionName();
const char* GetLatitudeDimensionName();
const char* GetLongitudeDimensionName();
const char* GetVerticalDimensionName();
///@}
protected:
vtkNetCDFCFReader();
~vtkNetCDFCFReader() override;
vtkTypeBool SphericalCoordinates;
double VerticalScale;
double VerticalBias;
int OutputType;
int RequestDataObject(vtkInformation* request, vtkInformationVector** inputVector,
vtkInformationVector* outputVector) override;
int RequestInformation(vtkInformation* request, vtkInformationVector** inputVector,
vtkInformationVector* outputVector) override;
int RequestData(vtkInformation* request, vtkInformationVector** inputVector,
vtkInformationVector* outputVector) override;
///@{
/**
* Interprets the special conventions of COARDS.
*/
int ReadMetaData(int ncFD) override;
int IsTimeDimension(int ncFD, int dimId) override;
vtkSmartPointer<vtkDoubleArray> GetTimeValues(int ncFD, int dimId) override;
///@}
class vtkDimensionInfo
{
public:
vtkDimensionInfo() = default;
vtkDimensionInfo(vtkNetCDFAccessor* accessor, int ncFD, int id,
const std::vector<std::string>& dimensionNames);
const char* GetName() const { return this->Name.c_str(); }
enum UnitsEnum
{
UNDEFINED_UNITS,
TIME_UNITS,
LATITUDE_UNITS,
LONGITUDE_UNITS,
VERTICAL_UNITS,
NUMBER_OF_UNITS
};
UnitsEnum GetUnits() const { return this->Units; }
vtkSmartPointer<vtkDoubleArray> GetCoordinates() { return this->Coordinates; }
vtkSmartPointer<vtkDoubleArray> GetBounds() { return this->Bounds; }
bool GetHasRegularSpacing() const { return this->HasRegularSpacing; }
double GetOrigin() const { return this->Origin; }
double GetSpacing() const { return this->Spacing; }
vtkSmartPointer<vtkStringArray> GetSpecialVariables() const { return this->SpecialVariables; }
void SetUnitsIfSpecialDimensionOverriden(UnitsEnum unit, const char* name);
protected:
vtkNetCDFAccessor* Accessor = nullptr;
vtkStdString Name;
int DimId;
vtkSmartPointer<vtkDoubleArray> Coordinates;
vtkSmartPointer<vtkDoubleArray> Bounds;
UnitsEnum Units;
bool HasRegularSpacing;
double Origin, Spacing;
vtkSmartPointer<vtkStringArray> SpecialVariables;
std::vector<std::string> SpecialDimensionOverrideNames;
int LoadMetaData(int ncFD);
};
void SetSpecialDimensionOverrideName(vtkDimensionInfo::UnitsEnum dim, const char* name)
{
this->SpecialDimensionOverrideNames[dim] = name;
}
const char* GetSpecialDimensionName(vtkDimensionInfo::UnitsEnum dim);
class vtkDimensionInfoVector;
friend class vtkDimensionInfoVector;
vtkDimensionInfoVector* DimensionInfo;
vtkDimensionInfo* GetDimensionInfo(int dimension);
class vtkDependentDimensionInfo
{
public:
vtkDependentDimensionInfo(vtkNetCDFAccessor* accessor)
: Accessor(accessor)
, Valid(false)
{
}
vtkDependentDimensionInfo(
vtkNetCDFAccessor* accessor, int ncFD, int varId, vtkNetCDFCFReader* parent);
bool GetValid() const { return this->Valid; }
bool GetHasBounds() const { return this->HasBounds; }
bool GetCellsUnstructured() const { return this->CellsUnstructured; }
vtkSmartPointer<vtkIntArray> GetGridDimensions() const { return this->GridDimensions; }
vtkSmartPointer<vtkDoubleArray> GetLongitudeCoordinates() const
{
return this->LongitudeCoordinates;
}
vtkSmartPointer<vtkDoubleArray> GetLatitudeCoordinates() const
{
return this->LatitudeCoordinates;
}
vtkSmartPointer<vtkStringArray> GetSpecialVariables() const { return this->SpecialVariables; }
protected:
vtkNetCDFAccessor* Accessor;
bool Valid;
bool HasBounds;
bool CellsUnstructured;
vtkSmartPointer<vtkIntArray> GridDimensions;
vtkSmartPointer<vtkDoubleArray> LongitudeCoordinates;
vtkSmartPointer<vtkDoubleArray> LatitudeCoordinates;
vtkSmartPointer<vtkStringArray> SpecialVariables;
int LoadMetaData(int ncFD, int varId, vtkNetCDFCFReader* parent);
int LoadCoordinateVariable(int ncFD, int varId, vtkDoubleArray* coords);
int LoadBoundsVariable(int ncFD, int varId, vtkDoubleArray* coords);
int LoadUnstructuredBoundsVariable(int ncFD, int varId, vtkDoubleArray* coords);
};
friend class vtkDependentDimensionInfo;
class vtkDependentDimensionInfoVector;
friend class vtkDependentDimensionInfoVector;
vtkDependentDimensionInfoVector* DependentDimensionInfo;
// Finds the dependent dimension information for the given set of dimensions.
// Returns nullptr if no information has been recorded.
vtkDependentDimensionInfo* FindDependentDimensionInfo(vtkIntArray* dims);
/**
* Given the list of dimensions, identify the longitude, latitude, and
* vertical dimensions. -1 is returned for any not found. The results depend
* on the values in this->DimensionInfo.
*/
virtual void IdentifySphericalCoordinates(
vtkIntArray* dimensions, int& longitudeDim, int& latitudeDim, int& verticalDim);
enum CoordinateTypesEnum
{
COORDS_UNIFORM_RECTILINEAR,
COORDS_NONUNIFORM_RECTILINEAR,
COORDS_REGULAR_SPHERICAL,
COORDS_2D_EUCLIDEAN,
COORDS_2D_SPHERICAL,
COORDS_EUCLIDEAN_4SIDED_CELLS,
COORDS_SPHERICAL_4SIDED_CELLS,
COORDS_EUCLIDEAN_PSIDED_CELLS,
COORDS_SPHERICAL_PSIDED_CELLS
};
/**
* Based on the given dimensions and the current state of the reader, returns
* how the coordinates should be interpreted. The returned value is one of
* the CoordinateTypesEnum identifiers.
*/
CoordinateTypesEnum CoordinateType(vtkIntArray* dimensions);
/**
* Returns false for spherical dimensions, which should use cell data.
*/
bool DimensionsAreForPointData(vtkIntArray* dimensions) override;
/**
* Convenience function that takes piece information and then returns a set of
* extents to load based on this->WholeExtent. The result is returned in
* extent.
*/
void ExtentForDimensionsAndPiece(
int pieceNumber, int numberOfPieces, int ghostLevels, int extent[6]);
/**
* Overridden to retrieve stored extent for unstructured data.
*/
void GetUpdateExtentForOutput(vtkDataSet* output, int extent[6]) override;
///@{
/**
* Internal methods for setting rectilinear coordinates.
*/
void AddRectilinearCoordinates(vtkImageData* imageOutput);
void AddRectilinearCoordinates(vtkRectilinearGrid* rectilinearOutput);
void FakeRectilinearCoordinates(vtkRectilinearGrid* rectilinearOutput);
void Add1DRectilinearCoordinates(vtkPoints* points, const int extent[6]);
void Add2DRectilinearCoordinates(vtkPoints* points, const int extent[6]);
void Add1DRectilinearCoordinates(vtkStructuredGrid* structuredOutput);
void Add2DRectilinearCoordinates(vtkStructuredGrid* structuredOutput);
void FakeStructuredCoordinates(vtkStructuredGrid* structuredOutput);
void Add1DRectilinearCoordinates(vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
void Add2DRectilinearCoordinates(vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
///@}
///@{
/**
* Internal methods for setting spherical coordinates.
*/
void Add1DSphericalCoordinates(vtkPoints* points, const int extent[6]);
void Add2DSphericalCoordinates(vtkPoints* points, const int extent[6]);
void Add1DSphericalCoordinates(vtkStructuredGrid* structuredOutput);
void Add2DSphericalCoordinates(vtkStructuredGrid* structuredOutput);
void Add1DSphericalCoordinates(vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
void Add2DSphericalCoordinates(vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
///@}
/**
* Internal method for building unstructred cells that match structured cells.
*/
void AddStructuredCells(vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
///@{
/**
* Internal methods for creating unstructured cells.
*/
void AddUnstructuredRectilinearCoordinates(
vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
void AddUnstructuredSphericalCoordinates(
vtkUnstructuredGrid* unstructuredOutput, const int extent[6]);
///@}
std::vector<std::string> SpecialDimensionOverrideNames;
private:
vtkNetCDFCFReader(const vtkNetCDFCFReader&) = delete;
void operator=(const vtkNetCDFCFReader&) = delete;
};
VTK_ABI_NAMESPACE_END
#endif // vtkNetCDFCFReader_h
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