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=head1 NAME
randommodel module - part of the Wise2 package
=head1 SYNOPSIS
This module contains the following objects
=over
=item RandomModelDNA
=item RandomModel
=back
=head1 DESCRIPTION
=head2 Object RandomModelDNA
=over
=item base[5]
Type [Probability] Scalar No documentation
=item name
Type [char *] Scalar No documentation
=back
No documentation for RandomModelDNA
=head2 Member functions of RandomModelDNA
=over
=item hard_link_RandomModelDNA
&Wise2::RandomModelDNA::hard_link_RandomModelDNA(obj)
Bumps up the reference count of the object
Meaning that multiple pointers can 'own' it
Argument obj [UNKN ] Object to be hard linked [RandomModelDNA *]
Return [UNKN ] Undocumented return value [RandomModelDNA *]
=item alloc
&Wise2::RandomModelDNA::alloc(void)
Allocates structure: assigns defaults if given
Return [UNKN ] Undocumented return value [RandomModelDNA *]
=item set_name
&Wise2::RandomModelDNA::set_name(obj,name)
Replace member variable name
For use principly by API functions
Argument obj [UNKN ] Object holding the variable [RandomModelDNA *]
Argument name [OWNER] New value of the variable [char *]
Return [SOFT ] member variable name [boolean]
=item name
&Wise2::RandomModelDNA::name(obj)
Access member variable name
For use principly by API functions
Argument obj [UNKN ] Object holding the variable [RandomModelDNA *]
Return [SOFT ] member variable name [char *]
=back
=head2 Object RandomModel
=over
=item aminoacid[26]
Type [Probability] Scalar No documentation
=item name
Type [char *] Scalar No documentation
=back
No documentation for RandomModel
=head2 Member functions of RandomModel
=over
=item hard_link_RandomModel
&Wise2::RandomModel::hard_link_RandomModel(obj)
Bumps up the reference count of the object
Meaning that multiple pointers can 'own' it
Argument obj [UNKN ] Object to be hard linked [RandomModel *]
Return [UNKN ] Undocumented return value [RandomModel *]
=item alloc
&Wise2::RandomModel::alloc(void)
Allocates structure: assigns defaults if given
Return [UNKN ] Undocumented return value [RandomModel *]
=item set_name
&Wise2::RandomModel::set_name(obj,name)
Replace member variable name
For use principly by API functions
Argument obj [UNKN ] Object holding the variable [RandomModel *]
Argument name [OWNER] New value of the variable [char *]
Return [SOFT ] member variable name [boolean]
=item name
&Wise2::RandomModel::name(obj)
Access member variable name
For use principly by API functions
Argument obj [UNKN ] Object holding the variable [RandomModel *]
Return [SOFT ] member variable name [char *]
=back
=over
=item RandomModelDNA_std
&Wise2::RandomModelDNA_std(void)
Returns a structure with 0.25 set in each place
Return [UNKN ] Undocumented return value [RandomModelDNA *]
=item default_RandomModel
&Wise2::default_RandomModel(void)
Gives a default random model numbers from
swissprot34- via the HMMEr1 package
Return [UNKN ] Undocumented return value [RandomModel *]
=back
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