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|
#!/usr/bin/make -f
# -*- makefile -*-
include /usr/share/dpkg/default.mk
pkg-data := $(DEB_SOURCE)-data
# Uncomment this to turn on verbose mode.
export DH_VERBOSE=1
export LC_ALL=C.UTF-8
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
# FIXME: work around weird compiler behavior causing:
#
# motifmatrix.c:408:24: error: assignment to ‘char’ from ‘void *’
# makes integer from pointer without a cast
# [-Wint-conversion]
# 408 | for(i=0;i<leni;i++) {
# | ^
#
# Of course, there are no visible assigment to "char" from "void *"
# around that hunk, and the compiler hints moves around pointing nowhere
# relevant, suggesting a compiler bug.
export DEB_CFLAGS_MAINT_APPEND = -Wno-error=int-conversion
# hardening flags
DPKG_EXPORT_BUILDFLAGS = 1
include /usr/share/dpkg/buildflags.mk
%:
dh $@
override_dh_auto_build:
# The dyc compiler is needed before building the all the rest.
# Also, it pre-depends on the libwisebase library, otherwise
# linking fails.
dh_auto_build --sourcedirectory=src/base -- libwisebase.a
dh_auto_build --sourcedirectory=src/dyc -- dyc
PATH="$$PATH:$(CURDIR)/src/dyc" \
dh_auto_build --sourcedirectory=src -- all
$(MAKE) -C debian/manpages.d
# build documentation manually (docs/makefile is not useable)
find src/models/ src/dynlibsrc/ -name '*.tex' -print0 | LC_ALL=C sort -z | xargs -0 cat | perl docs/gettex.pl > docs/temp.tex
cat docs/wise2api.tex docs/temp.tex docs/apiend.tex > docs/api.tex
# <bugfix>
sed -i 's/ sw_wrap / sw\\_wrap /' docs/api.tex
sed -i 's/label{module_sequence\\_codon}/label{module_sequence_codon}/' docs/api.tex
sed -i 's/Wise2::GeneParameter21_wrap/Wise2::GeneParameter21\\_wrap/' docs/api.tex
# </bugfix>
cd docs && pdflatex api.tex
cd docs && pdflatex api.tex
cd docs && pdflatex dynamite.tex
cd docs && pdflatex dynamite.tex
# cd docs && ps2pdf genewise6.eps # segfaults on s390
# cd docs && ps2pdf genewise21.eps
cd docs && pdflatex wise2.tex
cd docs && pdflatex wise2.tex
cd docs && hevea api.tex
cd docs && hevea api.tex
cd docs && hevea dynamite.tex
cd docs && hevea dynamite.tex
cd docs && hevea wise2.tex
cd docs && hevea wise2.tex
mkdir -p docs/api
mkdir -p docs/dynamite
mkdir -p docs/wise2
mv docs/api.html docs/api
mv docs/dynamite.html docs/dynamite
mv docs/wise2.html docs/wise2
dh_auto_build
override_dh_clean:
$(MAKE) -C src clean
$(MAKE) -C debian/manpages.d clean
# bugfix
$(RM) -r src/oldbin
for i in dba psw dnal genomewise pswdb scanwise estwise genewise sywise genewisedb promoterwise pseudowise estwisedb; do $(RM) src/models/$$i; done
$(RM) src/network/scanwise_server
# clean documentation
$(RM) docs/temp.tex
$(RM) docs/api.*
$(RM) docs/wise2.image.tex
$(RM) docs/*.pdf
$(RM) docs/*.aux
$(RM) docs/*.log
$(RM) docs/*.toc
$(RM) docs/*.pdf
$(RM) docs/*.dvi
$(RM) docs/*.ps
$(RM) docs/*.4ct
$(RM) docs/*.4tc
$(RM) docs/*.css
$(RM) docs/*.idv
$(RM) docs/*.lg
$(RM) docs/*.tmp
$(RM) docs/*.xref
$(RM) docs/*.haux
$(RM) docs/*.htoc
$(RM) docs/*.html
$(RM) -r docs/api
$(RM) -r docs/dynamite
$(RM) -r docs/wise2
dh_clean
override_dh_installexamples-indep:
dh_installexamples
sed -i -e 's?"../bin/$$do"?"$$do"?' -e 's?#!/usr/local/bin/perl?/usr/bin/perl?' debian/$(pkg-data)/usr/share/doc/wise-data/examples/testman.pl
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
echo "Since a patch was used to adapt the binaries to the Debian locations of data files the test suite will not run in the build directory any more."
echo "A autopkgtest was added as compensation."
# make -C src test
endif
override_dh_fixperms:
dh_fixperms
find debian -iname "*.hmm" -exec chmod -x \{\} \;
|
