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|
@string{AHG = "Annals of Human Genetics"}
@string{AJHG = "American Journal of Human Genetics"}
@string{ARB = "Annual Review of Biochemistry"}
@string{ARCB = "Annual Review of Cell Biology"}
@string{BI = "Bioinformatics"}
@string{BIOGEN = "Biochemical Genetics"}
@string{BJLS = "Biological Journal of the Linnean Society"}
@string{BMB = "Bulletin of Mathematical Biology"}
@string{CABIOS = "Computer Applications in the Biosciences"}
@string{CACM = "Communications of the ACM"}
@string{COCB = "Current Opinion in Cell Biology"}
@string{COSB = "Current Opinion in Structural Biology"}
@string{CSHSQB = "Cold Spring Harbor Symposia Quantitative Biology"}
@string{ComputChem = "Computers and Chemistry"}
@string{EMBO = "EMBO Journal"}
@string{EVO = "Evolution"}
@string{GEN = "Genetics"}
@string{JBSD = "Journal of Biomolecular Structure and Dynamics"}
@string{JComputBiol = "Journal of Computational Biology"}
@string{JCB = JComputBiol}
@string{JMB = "Journal of Molecular Biology"}
@string{JME = "Journal of Molecular Evolution"}
@string{JRSS = "Journal of the Royal Statistical Society, B"}
@string{JTB = "Journal of Theoretical Biology"}
@string{MBE = "Molecular Biology and Evolution"}
@string{MBIO = "Mathematical Biosciences"}
@string{ME = "Methods in Enzymology"}
@string{MPE = "Molecular Phylogenetics and Evolution"}
@string{NAR = "Nucleic Acids Research"}
@string{NC = "Neural Computation"}
@string{NNB = "Nature New Biology"}
@string{Nature = "Nature"}
@string{PE = "Protein Engineering"}
@string{PNAS = "Proceedings of the National Academy of Sciences of the USA"}
@string{PROT = "Proteins"}
@string{PROTSCI = "Protein Science"}
@string{SIAM = "SIAM Journal of Applied Mathematics"}
@string{SYSB = "Systematic Biology"}
@string{SZ = "Systematic Zoology"}
@string{Science = "Science"}
@string{S = Science}
@string{TIBTECH= "Trends in Biotechnology"}
@string{TIGS = "Trends in Genetics"}
@string{TIBS = "Trends in Biochemistry"}
@string{UKSB = "University of Kansas Scientific Bulletin"}
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booktitle = "Hawaii International Conference on System Sciences",
year = "1992",
volume = "1",
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journal = JME,
year = "1992",
volume = "35",
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@techreport{AllisonWallace93,
author = "L. Allison and C. S. Wallace",
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institution = "Monash University Computer Science",
year = 1993,
number = "TR 93/188"
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@Article{Altschul90,
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author = {S. F. Altschul and T. L. Madden and A. A. Schaffer and
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% RD says:
% this is the correct latest swissprot reference to replace
% BairochApweiler96 in your list - I updated the only \cite{BA96}
% in the book, in profhmm.
@Article{Bairoch97,
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Title="{Initial sequencing and comparative analysis of the mouse genome}",
Journal="Nature",
Year="2002",
Volume="420",
Number="6915",
Pages="520-562",
Month="Dec"
}
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@Article{BirneyDurbin2000,
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Title="{Computational inference of homologous gene structures in the human genome}",
Journal="Genome Res",
Year="2001",
Volume="11",
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Pages="803-816",
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Kevin. L. and Chothia, Tom. and Durbin, Richard.", Title="{GAZE: a
generic framework for the integration of gene-prediction data by dynamic
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Irmtraud. M. and Durbin, Richard.", Title="{Comparative ab initio
prediction of gene structures using pair HMMs}",
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@Article{Zhang2003, Author="Zhang,
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Genis. and Agarwal, Pankaj. and Abril, Josep. F. and Wiehe, Thomas. and
Fickett, James. W. and Guigo, Roderic.", Title="{Comparative gene
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@Article{Twinscan2003, Author="Flicek,
Paul. and Keibler, Evan. and Hu, Ping. and Korf, Ian. and Brent,
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human: from whole-genome shotgun reads to a global synteny map}",
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@Article{Pedersen2003, Author="Pedersen,
Jakob. Skou. and Hein, Jotun.", Title="{Gene finding with a hidden
Markov model of genome structure and evolution}",
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@Article{Pachter2003,
Author="Alexandersson, Marina. and Cawley, Simon. and Pachter, Lior.",
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generalized pair hidden Markov model}", Journal="Genome Res",
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Eric. S. and Nusbaum, Chad. and Birren, Bruce.", Title="{The genome
sequence of the filamentous fungus Neurospora crassa}",
Journal="Nature", Year="2003", Volume="422", Number="6934",
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% 9518021 (JID) 20499375 (UI)
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