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#ifndef BBS_MODEL_H
#define BBS_MODEL_H
#include "model.h"
#include "modelsource.h"
#include "powerlawsed.h"
#include <aocommon/uvector.h>
#include <aocommon/radeccoord.h>
#include <boost/tokenizer.hpp>
#include <boost/algorithm/string/case_conv.hpp>
#include <boost/algorithm/string/trim.hpp>
#include <string>
#include <stdexcept>
#include <fstream>
namespace wsclean {
class BBSModel {
public:
/**
* Parse the specified model file or stream and place the result in a Model
* object.
* @returns The model containing all sources specified by the file.
* @{
*/
static Model Read(const std::string& input_filename,
const std::string& source_name = "") {
return read(input_filename, {}, source_name);
}
static Model Read(std::istream& input_stream,
const std::string& source_name = "") {
return read(input_stream, {}, source_name);
}
/** @} */
/**
* Parse the specified model file and call a function when a source is
* found. This function avoids having the entire model in memory. The
* render tool makes use of this function to stream through a model
* and immediately draw the source to the image. In such scenarios,
* it is not uncommon to have millions of sources in the model file.
*/
static void Read(
const std::string& input,
const std::function<void(const ModelSource& source)>& processSource,
const std::string& source_name = "") {
read(input, processSource, source_name);
}
private:
static std::string TrimQuotes(const std::string& input) {
if (input.empty()) return {};
if (input[0] != '\'' || input.size() == 1)
return input;
else {
return input.substr(1, input.size() - 2);
}
}
static Model read(
const std::string& input_filename,
const std::function<void(const ModelSource& source)>& processSource,
const std::string& sourceName = "") {
std::ifstream input_file(input_filename);
if (!input_file)
throw BBSParseException("Could not open model file '" + input_filename +
"'");
return read(input_file, processSource, sourceName);
}
static Model read(
std::istream& input_stream,
const std::function<void(const ModelSource& source)>& processSource,
const std::string& sourceName = "") {
std::string line;
std::getline(input_stream, line);
if (line.size() >= 3 && line.substr(0, 3) == "# (")
line = line.substr(3);
else if (boost::to_lower_copy(line.substr(0, 8)) == "format =")
line = line.substr(8);
else
throw BBSParseException("BBS model does not start with format line");
if (line.size() >= 8 &&
boost::to_lower_copy(line.substr(line.size() - 8)) == "= format")
line = line.substr(0, line.size() - 8);
boost::char_separator<char> sep(" ,()");
boost::tokenizer<boost::char_separator<char>> tok(line, sep);
Headers h;
int index = 0;
double default_reference_frequency = 0.0;
for (const auto& s : tok) {
std::string key =
boost::algorithm::to_lower_copy(boost::algorithm::trim_copy(s));
std::string defaultVal;
size_t eq = key.find('=');
if (eq != std::string::npos) {
if (eq + 1 <= key.size())
defaultVal =
TrimQuotes(boost::algorithm::trim_copy(key.substr(eq + 1)));
key = key.substr(0, eq);
}
if (key == "patch")
h.patchInd = index; // skip
else if (key == "name")
h.nameInd = index;
else if (key == "type")
h.typeInd = index;
else if (key == "ra")
h.raInd = index;
else if (key == "dec")
h.decInd = index;
else if (key == "i")
h.iInd = index;
else if (key == "spectralterms" || key == "spectralindex")
h.spectrInd = index;
else if (key == "referencefrequency") {
h.referenceFrequency = index;
default_reference_frequency = std::atof(defaultVal.c_str());
} else if (key == "majoraxis")
h.majAxisInd = index;
else if (key == "minoraxis")
h.minAxisInd = index;
else if (key == "orientation")
h.orientationInd = index;
else if (key == "format" || key == "q" || key == "u" || key == "v")
; // skip
else if (key == "logarithmicsi")
h.logSIInd = index;
else
throw BBSParseException("Unknown header: '" + key + "'");
++index;
}
Model model;
std::getline(input_stream, line);
ModelSource globalSource;
if (!sourceName.empty()) globalSource.SetName(sourceName);
while (input_stream.good()) {
ModelSource source;
ModelComponent component;
bool isPatch = false;
double refFreq = 0;
aocommon::UVector<double> frequencyTerms;
PowerLawSED sed;
double stokesI = 0.0;
index = 0;
if (!line.empty() && line[0] != '#') {
BBSLine bbsLine(line);
while (bbsLine.MoveToNext()) {
std::string val = bbsLine.Value();
if (index == h.nameInd)
source.SetName(val);
else if (index == h.patchInd)
source.SetClusterName(val);
else if (index == h.raInd) {
if (val.empty())
isPatch = true;
else {
try {
const double ra = RaDecCoord::ParseRA(val);
component.SetPosRA(ra);
} catch (std::exception& e) {
throw std::runtime_error("Source " + source.Name() +
" has invalid RA: " + val + ",\n" +
e.what());
}
}
} else if (index == h.decInd) {
if (val.empty())
isPatch = true;
else {
try {
const double dec = RaDecCoord::ParseDec(val);
component.SetPosDec(dec);
} catch (std::exception& e) {
throw std::runtime_error("Source " + source.Name() +
" has invalid Dec: " + val + ",\n" +
e.what());
}
}
} else if (index == h.typeInd) {
std::string typeStr(val);
boost::algorithm::to_lower(typeStr);
if (typeStr == "point")
component.SetType(ModelComponent::PointSource);
else if (typeStr == "gaussian")
component.SetType(ModelComponent::GaussianSource);
else if (typeStr == "")
isPatch = true;
else
throw BBSParseException("Unknown source type: " + val);
} else if (index == h.spectrInd) {
boost::char_separator<char> freqsep("[,] ");
boost::tokenizer<boost::char_separator<char>> freqtok(val, freqsep);
for (const auto& fval : freqtok)
frequencyTerms.push_back(atof(fval.c_str()));
} else if (index == h.majAxisInd)
component.SetMajorAxis(atof(val.c_str()) *
(M_PI / 180.0 / 60.0 / 60.0));
else if (index == h.minAxisInd)
component.SetMinorAxis(atof(val.c_str()) *
(M_PI / 180.0 / 60.0 / 60.0));
else if (index == h.orientationInd)
component.SetPositionAngle(atof(val.c_str()) * (M_PI / 180.0));
else if (index == h.referenceFrequency) {
refFreq = atof(val.c_str());
if (refFreq == 0.0) refFreq = default_reference_frequency;
} else if (index == h.iInd)
stokesI = atof(val.c_str());
else if (index == h.logSIInd)
sed.SetIsLogarithmic(val != "false");
++index;
}
double brightness[] = {stokesI, 0.0, 0.0, 0.0};
sed.SetData(refFreq, brightness, frequencyTerms);
component.SetSED(sed);
if (!isPatch) {
if (sourceName.empty()) {
source.AddComponent(component);
if (processSource)
processSource(source);
else
model.AddSource(source);
} else {
globalSource.AddComponent(component);
}
}
}
std::getline(input_stream, line);
}
if (!sourceName.empty()) {
if (processSource)
processSource(globalSource);
else
model.AddSource(globalSource);
}
return model;
}
private:
class BBSLine {
public:
BBSLine(const std::string& line)
: _startIndex(0), _endIndex(0), _line(line) {}
bool MoveToNext() {
if (_endIndex >= _line.size()) return false;
_startIndex = _endIndex;
bool insideBracket = false;
while (_endIndex < _line.size()) {
if (_line[_endIndex] == ',' && !insideBracket) {
++_endIndex;
return true;
} else if (_line[_endIndex] == '[')
insideBracket = true;
else if (_line[_endIndex] == ']' && insideBracket)
insideBracket = false;
++_endIndex;
}
return true;
}
std::string Value() const {
if (_endIndex == _line.size())
return boost::algorithm::trim_copy(
_line.substr(_startIndex, _endIndex - _startIndex));
else if (_endIndex > 0)
return boost::algorithm::trim_copy(
_line.substr(_startIndex, _endIndex - _startIndex - 1));
else
return std::string();
}
private:
size_t _startIndex, _endIndex;
std::string _line;
};
struct BBSParseException : public std::runtime_error {
BBSParseException(const std::string& s) : std::runtime_error(s) {}
};
struct Headers {
int nameInd = -1, typeInd = -1, patchInd = -1, raInd = -1, decInd = -1,
iInd = -1, spectrInd = -1, referenceFrequency = -1, majAxisInd = -1,
minAxisInd = -1, orientationInd = -1, logSIInd = -1;
};
};
} // namespace wsclean
#endif
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