1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531
|
/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
* Copyright by the Board of Trustees of the University of Illinois. *
* All rights reserved. *
* *
* This file is part of HDF5. The full HDF5 copyright notice, including *
* terms governing use, modification, and redistribution, is contained in *
* the files COPYING and Copyright.html. COPYING can be found at the root *
* of the source code distribution tree; Copyright.html can be found at the *
* root level of an installed copy of the electronic HDF5 document set and *
* is linked from the top-level documents page. It can also be found at *
* http://hdf.ncsa.uiuc.edu/HDF5/doc/Copyright.html. If you do not have *
* access to either file, you may request a copy from hdfhelp@ncsa.uiuc.edu. *
* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
/*
* Programmer: Quincey Koziol <koziol@ncsa.uiuc.edu>
* Friday, January 30, 2004
*
* Purpose: Common routines for all MPI-based VFL drivers.
*
*/
#include "H5private.h" /* Generic Functions */
#include "H5Eprivate.h" /* Error handling */
#include "H5Fprivate.h" /* File access */
#include "H5FDprivate.h" /* File drivers */
#include "H5FDmpi.h" /* Common MPI file driver */
#include "H5Pprivate.h" /* Property lists */
/*
* The view is set to this value
*/
char H5FD_mpi_native_g[] = "native";
#ifdef H5_HAVE_PARALLEL
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_get_rank
*
* Purpose: Retrieves the rank of an MPI process.
*
* Return: Success: The rank (non-negative)
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* Friday, January 30, 2004
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
H5FD_mpi_get_rank(const H5FD_t *file)
{
const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls);
int ret_value;
FUNC_ENTER_NOAPI(H5FD_mpi_get_rank, FAIL)
assert(file && cls);
assert(cls->get_rank); /* All MPI drivers must implement this */
/* Dispatch to driver */
if ((ret_value=(cls->get_rank)(file))<0)
HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "driver get_rank request failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpi_get_rank() */
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_get_size
*
* Purpose: Retrieves the size of the communicator used for the file
*
* Return: Success: The communicator size (non-negative)
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* Friday, January 30, 2004
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
int
H5FD_mpi_get_size(const H5FD_t *file)
{
const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls);
int ret_value;
FUNC_ENTER_NOAPI(H5FD_mpi_get_size, FAIL)
assert(file && cls);
assert(cls->get_size); /* All MPI drivers must implement this */
/* Dispatch to driver */
if ((ret_value=(cls->get_size)(file))<0)
HGOTO_ERROR(H5E_VFL, H5E_CANTGET, FAIL, "driver get_size request failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpi_get_size() */
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_get_comm
*
* Purpose: Retrieves the file's communicator
*
* Return: Success: The communicator (non-negative)
*
* Failure: Negative
*
* Programmer: Quincey Koziol
* Friday, January 30, 2004
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
MPI_Comm
H5FD_mpi_get_comm(const H5FD_t *file)
{
const H5FD_class_mpi_t *cls=(const H5FD_class_mpi_t *)(file->cls);
MPI_Comm ret_value;
FUNC_ENTER_NOAPI(H5FD_mpi_get_comm, MPI_COMM_NULL)
assert(file && cls);
assert(cls->get_comm); /* All MPI drivers must implement this */
/* Dispatch to driver */
if ((ret_value=(cls->get_comm)(file))==MPI_COMM_NULL)
HGOTO_ERROR(H5E_VFL, H5E_CANTGET, MPI_COMM_NULL, "driver get_comm request failed")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpi_get_comm() */
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_MPIOff_to_haddr
*
* Purpose: Convert an MPI_Offset value to haddr_t.
*
* Return: Success: The haddr_t equivalent of the MPI_OFF
* argument.
*
* Failure: HADDR_UNDEF
*
* Programmer: Unknown
* January 30, 1998
*
* Modifications:
* Robb Matzke, 1999-04-23
* An error is reported for address overflows. The ADDR output
* argument is optional.
*
* Robb Matzke, 1999-08-06
* Modified to work with the virtual file layer.
*-------------------------------------------------------------------------
*/
haddr_t
H5FD_mpi_MPIOff_to_haddr(MPI_Offset mpi_off)
{
haddr_t ret_value=HADDR_UNDEF;
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FD_mpi_MPIOff_to_haddr)
if (mpi_off != (MPI_Offset)(haddr_t)mpi_off)
ret_value=HADDR_UNDEF;
else
ret_value=(haddr_t)mpi_off;
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_haddr_to_MPIOff
*
* Purpose: Convert an haddr_t value to MPI_Offset.
*
* Return: Success: Non-negative, the MPI_OFF argument contains
* the converted value.
*
* Failure: Negative, MPI_OFF is undefined.
*
* Programmer: Unknown
* January 30, 1998
*
* Modifications:
* Robb Matzke, 1999-04-23
* An error is reported for address overflows. The ADDR output
* argument is optional.
*
* Robb Matzke, 1999-07-28
* The ADDR argument is passed by value.
*
* Robb Matzke, 1999-08-06
* Modified to work with the virtual file layer.
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpi_haddr_to_MPIOff(haddr_t addr, MPI_Offset *mpi_off/*out*/)
{
herr_t ret_value=FAIL;
FUNC_ENTER_NOAPI_NOINIT_NOFUNC(H5FD_mpi_haddr_to_MPIOff)
assert(mpi_off);
/* Convert the HDF5 address into an MPI offset */
*mpi_off = (MPI_Offset)addr;
if (addr != (haddr_t)((MPI_Offset)addr))
ret_value=FAIL;
else
ret_value=SUCCEED;
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_comm_info_dup
*
* Purpose: Make duplicates of communicator and Info object.
* If the Info object is in fact MPI_INFO_NULL, no duplicate
* is made but the same value assigned to the new Info object
* handle.
*
* Return: Success: Non-negative. The new communicator and Info
* object handles are returned via comm_new and
* info_new pointers.
*
* Failure: Negative.
*
* Programmer: Albert Cheng
* Jan 8, 2003
*
* Modifications:
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpi_comm_info_dup(MPI_Comm comm, MPI_Info info, MPI_Comm *comm_new, MPI_Info *info_new)
{
herr_t ret_value=SUCCEED;
MPI_Comm comm_dup=MPI_COMM_NULL;
MPI_Info info_dup=MPI_INFO_NULL;
int mpi_code;
FUNC_ENTER_NOAPI(H5FD_mpi_comm_info_dup, FAIL)
/* Check arguments */
if (MPI_COMM_NULL == comm)
HGOTO_ERROR(H5E_INTERNAL, H5E_BADVALUE, FAIL, "not a valid argument")
if (!comm_new || !info_new)
HGOTO_ERROR(H5E_INTERNAL, H5E_BADVALUE, FAIL, "bad pointers")
/* Dup them. Using temporary variables for error recovery cleanup. */
if (MPI_SUCCESS != (mpi_code=MPI_Comm_dup(comm, &comm_dup)))
HMPI_GOTO_ERROR(FAIL, "MPI_Comm_dup failed", mpi_code)
if (MPI_INFO_NULL != info){
if (MPI_SUCCESS != (mpi_code=MPI_Info_dup(info, &info_dup)))
HMPI_GOTO_ERROR(FAIL, "MPI_Info_dup failed", mpi_code)
}else{
/* No dup, just copy it. */
info_dup = info;
}
/* copy them to the return arguments */
*comm_new = comm_dup;
*info_new = info_dup;
done:
if (FAIL == ret_value){
/* need to free anything created here */
if (MPI_COMM_NULL != comm_dup)
MPI_Comm_free(&comm_dup);
if (MPI_INFO_NULL != info_dup)
MPI_Info_free(&info_dup);
}
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_comm_info_free
*
* Purpose: Free the communicator and Info object.
* If comm or info is in fact MPI_COMM_NULL or MPI_INFO_NULL
* respectively, no action occurs to it.
*
* Return: Success: Non-negative. The values the pointers refer
* to will be set to the corresponding NULL
* handles.
*
* Failure: Negative.
*
* Programmer: Albert Cheng
* Jan 8, 2003
*
* Modifications:
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpi_comm_info_free(MPI_Comm *comm, MPI_Info *info)
{
herr_t ret_value=SUCCEED;
FUNC_ENTER_NOAPI(H5FD_mpi_comm_info_free, FAIL)
/* Check arguments */
if (!comm || !info)
HGOTO_ERROR(H5E_INTERNAL, H5E_BADVALUE, FAIL, "not a valid argument")
if (MPI_COMM_NULL != *comm)
MPI_Comm_free(comm);
if (MPI_INFO_NULL != *info)
MPI_Info_free(info);
done:
FUNC_LEAVE_NOAPI(ret_value)
}
#ifdef NOT_YET
/*-------------------------------------------------------------------------
* Function: H5FD_mpio_wait_for_left_neighbor
*
* Purpose: Blocks until (empty) msg is received from immediately
* lower-rank neighbor. In conjunction with
* H5FD_mpio_signal_right_neighbor, useful for enforcing
* 1-process-at-at-time access to critical regions to avoid race
* conditions (though it is overkill to require that the
* processes be allowed to proceed strictly in order of their
* rank).
*
* Note: This routine doesn't read or write any file, just performs
* interprocess coordination. It really should reside in a
* separate package of such routines.
*
* Return: Success: 0
* Failure: -1
*
* Programmer: rky
* 19981207
*
* Modifications:
* Robb Matzke, 1999-08-09
* Modified to work with the virtual file layer.
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpio_wait_for_left_neighbor(H5FD_t *_file)
{
H5FD_mpio_t *file = (H5FD_mpio_t*)_file;
char msgbuf[1];
MPI_Status rcvstat;
int mpi_code; /* mpi return code */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5FD_mpio_wait_for_left_neighbor, FAIL)
assert(file);
assert(H5FD_MPIO==file->pub.driver_id);
/* Portably initialize MPI status variable */
HDmemset(&rcvstat,0,sizeof(MPI_Status));
/* p0 has no left neighbor; all other procs wait for msg */
if (file->mpi_rank != 0) {
if (MPI_SUCCESS != (mpi_code=MPI_Recv( &msgbuf, 1, MPI_CHAR,
file->mpi_rank-1, MPI_ANY_TAG, file->comm, &rcvstat )))
HMPI_GOTO_ERROR(FAIL, "MPI_Recv failed", mpi_code)
}
done:
FUNC_LEAVE_NOAPI(ret_value)
}
/*-------------------------------------------------------------------------
* Function: H5FD_mpio_signal_right_neighbor
*
* Purpose: Blocks until (empty) msg is received from immediately
* lower-rank neighbor. In conjunction with
* H5FD_mpio_wait_for_left_neighbor, useful for enforcing
* 1-process-at-at-time access to critical regions to avoid race
* conditions (though it is overkill to require that the
* processes be allowed to proceed strictly in order of their
* rank).
*
* Note: This routine doesn't read or write any file, just performs
* interprocess coordination. It really should reside in a
* separate package of such routines.
*
* Return: Success: 0
* Failure: -1
*
* Programmer: rky
* 19981207
*
* Modifications:
* Robb Matzke, 1999-08-09
* Modified to work with the virtual file layer.
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpio_signal_right_neighbor(H5FD_t *_file)
{
H5FD_mpio_t *file = (H5FD_mpio_t*)_file;
char msgbuf[1];
int mpi_code; /* mpi return code */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5FD_mpio_signal_right_neighbor, FAIL)
assert(file);
assert(H5FD_MPIO==file->pub.driver_id);
if (file->mpi_rank != (file->mpi_size-1)) {
if (MPI_SUCCESS != (mpi_code=MPI_Send(&msgbuf, 0/*empty msg*/, MPI_CHAR,
file->mpi_rank+1, 0, file->comm)))
HMPI_GOTO_ERROR(FAIL, "MPI_Send failed", mpi_code)
}
done:
FUNC_LEAVE_NOAPI(ret_value)
}
#endif /* NOT_YET */
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_setup_collective
*
* Purpose: Set the buffer type BTYPE, file type FTYPE for a data
* transfer. Also request a MPI type transfer.
*
* Return: Success: 0
* Failure: -1
*
* Programmer: Robb Matzke
* Monday, August 9, 1999
*
* Modifications:
*
* Quincey Koziol - 2002/06/17
* Removed 'disp' parameter, read & write routines will use
* the address of the dataset in MPI_File_set_view() calls, as
* necessary.
*
* Quincey Koziol - 2002/06/17
* Changed to set temporary properties in a dxpl, instead of
* flags in the file struct, which will make this more threadsafe.
*
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpi_setup_collective(hid_t dxpl_id, MPI_Datatype btype, MPI_Datatype ftype)
{
H5P_genplist_t *plist; /* Property list pointer */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5FD_mpi_setup_collective, FAIL)
/* Check arguments */
if(NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dataset transfer list")
/* Set buffer MPI type */
if(H5P_insert(plist,H5FD_MPI_XFER_MEM_MPI_TYPE_NAME,H5FD_MPI_XFER_MEM_MPI_TYPE_SIZE,&btype,NULL,NULL,NULL,NULL,NULL,NULL)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't insert MPI-I/O property")
/* Set file MPI type */
if(H5P_insert(plist,H5FD_MPI_XFER_FILE_MPI_TYPE_NAME,H5FD_MPI_XFER_FILE_MPI_TYPE_SIZE,&ftype,NULL,NULL,NULL,NULL,NULL,NULL)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTSET, FAIL, "can't insert MPI-I/O property")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpi_setup_collective() */
/*-------------------------------------------------------------------------
* Function: H5FD_mpi_teardown_collective
*
* Purpose: Remove the temporary MPI-I/O properties from dxpl.
*
* Return: Success: Non-negative
* Failure: Negative
*
* Programmer: Quincey Koziol
* Monday, June 17, 2002
*
* Modifications:
*
*-------------------------------------------------------------------------
*/
herr_t
H5FD_mpi_teardown_collective(hid_t dxpl_id)
{
H5P_genplist_t *plist; /* Property list pointer */
herr_t ret_value=SUCCEED; /* Return value */
FUNC_ENTER_NOAPI(H5FD_mpi_teardown_collective, FAIL)
/* Check arguments */
if(NULL == (plist = H5P_object_verify(dxpl_id,H5P_DATASET_XFER)))
HGOTO_ERROR(H5E_PLIST, H5E_BADTYPE, FAIL, "not a dataset transfer list")
/* Remove buffer MPI type */
if(H5P_remove(dxpl_id,plist,H5FD_MPI_XFER_MEM_MPI_TYPE_NAME)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTDELETE, FAIL, "can't remove MPI-I/O property")
/* Remove file MPI type */
if(H5P_remove(dxpl_id,plist,H5FD_MPI_XFER_FILE_MPI_TYPE_NAME)<0)
HGOTO_ERROR(H5E_PLIST, H5E_CANTDELETE, FAIL, "can't remove MPI-I/O property")
done:
FUNC_LEAVE_NOAPI(ret_value)
} /* end H5FD_mpi_teardown_collective() */
#endif /* H5_HAVE_PARALLEL */
|