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.. xpore documentation master file, created by
sphinx-quickstart on Sat Dec 21 06:31:05 2019.
You can adapt this file completely to your liking, but it should at least
contain the root `toctree` directive.
Welcome to xPore's documentation!
=================================
xPore is a Python package for identification of differentail RNA modifications from Nanopore sequencing data.
To install the latest release, run::
pip install xpore
See our :ref:`Installation page <installation>` for details.
To check the version of xPore, run::
xpore -v
To detect differential modifications, you can follow the instructions in our :ref:`Quickstart page <quickstart>`.
Contents
------------------
.. toctree::
:maxdepth: 1
installation
quickstart
outputtable
configuration
preparation
data
cmd
citing
help
Contacts
--------
If you use xPore in your research, please cite
Ploy N. Pratanwanich, et al.,Identification of differential RNA modifications from nanopore direct RNA sequencing with xPore. *Nat Biotechnol* (2021), `https://doi.org/10.1038/s41587-021-00949-w <https://doi.org/10.1038/s41587-021-00949-w>`_
xPore is maintained by `Ploy N. Pratanwanich <https://github.com/ploy-np>`_, `Yuk Kei Wan <https://github.com/yuukiiwa>`_ and `Jonathan Goeke <https://github.com/jonathangoeke>`_ from the Genome Institute of Singapore, A*STAR.
If you want to contribute, please leave an issue in `our repo <https://github.com/GoekeLab/xpore>`_
Thank you!
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