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.. _outputtable:
Output table description
=========================
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Column name Description
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id transcript or gene id
position transcript or gene position
kmer 5-mer where modified base sits in the middle if modified
diff_mod_rate_<condition1>_vs_<condition2> differential modification rate between condition1 and condition2 (modification rate of condition1 - modification rate of condition2)
z_score_<condition1>_vs_<condition2> z score obtained from z-test of the differential modification rate
pval_<condition1>_vs_<condition2> significance level from z-test of the differential modification rate
mod_rate_<condition>-<replicate> modification rate of a replicate in the condition
mu_unmod inferred mean of the unmodified RNAs distribution
mu_mod inferred mean of the modified RNAs distribution
sigma2_unmod inferred sigma^2 of the unmodified RNAs distribution
sigma2_mod inferred sigma^2 of the modified RNAs distribution
conf_mu_unmod confidence level of mu_unmod compared to the unmodified reference signal
conf_mu_mod confidence level of mu_unmod compared to the unmodified reference signal
mod_assignment lower if mu_mod < mu_unmod and higher if mu_mod > mu_unmod
========================================== ========================================================================================================================================
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