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# 2019-01-18
# Status of all examples:
# 1st column: whether they are working
# 2nd column: whether there is a brief explanation at the top of the file what this example is demonstrating
# Notation: 'OK' - runs and does not produce obvious errors, 'ok' - acceptable, 'OK?' - works but looks suspicious, 'ok?' - even worse, 'x' - very bad/missing/not working
# the list below was created with command: tree -P "*.py" > list_of_examples.txt ; tree -P "*.py" ../doc/sphinx/tutorial >> list_of_examples.txt
#
# works?
# │explained inside what it is demonstrating?
│ │
│ │
OK │ok ├── 2D-Tori.py
OK │x ├── PIDController.py
x │x ├── ResetRandomPosition.py [with T = IGeomFunctor; typename boost::detail::sp_member_access<T>::type = IGeomFunctor*]: Assertion `px != 0' failed. SIGSEGV/SIGABRT handler called; gdb; Dispatching.cpp:85 null pointer, I guess that the problem is again with I->functorCache.geom
OK │OK ├── ViscElMatchMaker.py
OK │OK ├── billiard.py
OK │x ├── bouncingbubble.py Note: whoa, a Law2_ScGeom_BubblePhys_Bubble is used here. Never saw this one ;)
OK │OK ├── funnel.py
.. │ok ├── hdaps.py can't tell if it works, I don't have /sys/devices/platform/hdaps/ interface
OK │OK ├── mill.py
ok │x ├── rotationalResistance.py
OK │OK ├── spheresFactory.py
OK │ok ├── timeStepperUsage.py (a bit slow, but ok)
OK │ok ├── tunnel-pack.py (a bit slow, but ok)
│ │
│ │
│ ├── DeformEngine
x │ok │ ├── LOedometricDeform.py NameError: name 'DeformControl' is not defined
x │ok?│ └── OedometricDeform.py NameError: name 'DeformControl' is not defined
│ ├── FEMxDEM
ok?│x │ ├── biaxialSmooth.py
x │x │ ├── footing.py ImportError: No module named msFEM; it's a mistake in the script. There is no such module. It should be one of those: msFEM2D.py, msFEM3D.py, msFEMup.py
OK │x │ ├── prepareRVE.py
ok?│x │ ├── retainingSmooth.py
x │x │ ├── triaxialRough.py --> Returned value -2 instead of OPAL_SUCCESS, ompi_mpi_init: opal_init_util failed, Local abort before MPI_INIT completed completed successfully.
x │x │ └── undrain.py --> Returned value -2 instead of OPAL_SUCCESS, ompi_mpi_init: opal_init_util failed, Local abort before MPI_INIT completed completed successfully.
│ ├── FluidCouplingLBM
OK │OK │ └── buoyancy.py
│ ├── FluidCouplingPFV
OK?│OK │ ├── drainage-2PFV-Yuan_and_Chareyre_2017.py note: no visuals, I guess I would have to wait longer to see anything
OK │OK │ └── oedometer.py
│ ├── HydroForceEngine
│ │ ├── oneWayCoupling
OK │OK │ │ ├── buoyantParticles.py
OK │OK │ │ ├── fluidizedBed.py
OK │OK │ │ ├── postProcessing_sedim.py
OK │OK │ │ └── sedimentTransportExample.py
│ │ ├── twoWayCoupling
OK │ok │ │ ├── laminarShearFlow.py
x │OK │ │ ├── postProcessing_sedim.py line:49 ValueError: operands could not be broadcast together with shapes (900,) (901,) (900,)
OK │OK │ │ └── sedimentTransportExample_1DRANSCoupling.py
│ │ └── validations
│ │ ├── DEMCoupling
│ │ │ ├── Maurinetal2015
OK?│ok │ │ │ ├── postProcessValidMaurin2015.py Note: Plot of time vs. Qs is empty. Got: RuntimeWarning: invalid value encountered in divide
OK │OK │ │ │ └── validMaurin2015.py
│ │ │ └── Maurinetal2016_r2d6s2
│ │ │ ├── DATAr2d6s2_Maurinetal2016.py
OK?│OK │ │ ├── postProcessing_sedim.py Note: Plot of time vs. Qs is empty.
OK │OK │ │ └── sedimentTransportExample_1DRANSCoupling.py
│ │ └── fluidValidation
OK │OK │ ├── logProfile.py FIXME: this should go to yade --test or --check, because that's a test actually.
OK │OK │ └── poiseuille.py FIXME: this should go to yade --test or --check, because that's a test actually.
│ ├── LudingPM
x │x │ ├── LudingPM_1.py NewtonIntegrator: NaN force acting on #0.
x │x │ └── LudingPM_2.py NewtonIntegrator: NaN force acting on #0.
│ ├── PeriodicBoundaries
ok?│OK │ ├── cellFlipping.py
OK │ok │ ├── peri3dController_example1.py
OK │OK │ ├── peri3dController_shear.py
OK │OK │ ├── peri3dController_triaxialCompression.py
OK │ok │ ├── periodic-compress.py
OK?│OK │ ├── periodic-grow.py note: no visuals, I guess I would have to wait longer to see anything
OK │x │ ├── periodic-shear.py
OK │ok │ ├── periodic-simple-shear.py
OK │ok │ ├── periodic-simple.py
OK │OK │ ├── periodic-triax-settingHsize.py
OK │ok │ ├── periodic-triax.py
OK │OK │ └── periodicSandPile.py
│ ├── PotentialBlocks
x │ok │ ├── WedgeYADE.py terminal is spammed with messages like KnKsPBLaw.cpp:34 go: geom->penetrationDepth=0.00155115; de1->se3.position=-14.8839 8.48539 26.8419; de2->se3.position=-17.682 -6.95829 26.8667; The scene is empty until I click Display->intrAllWire
x │ok │ └── cubePBscaled.py print 20*'*'+' UNEXPECTED EXCEPTION WHILE RUNNING TESTS '+20*'*' ; print 'WARNING: compiled without OpenMP, -j/--threads/--cores have no effect.' ; scene looks empty iuntil I click Display->inrAllWire
│ ├── PotentialParticles
x │x │ ├── basic.py The sphere does not collide with the box, it goes through.
x │x │ └── cubePPscaled.py Drawing shapes is slow, hard to tell if it runs correctly. I disabled drawing of shapes, enabled intrAllWire. Ran simulation a bit to - seemed to work, then I clicked to enable drawing shapes and I got SIGSEGV/SIGABRT handler called; gdb, see: https://bugs.launchpad.net/yade/+bug/1813222
│ ├── WireMatPM
ok │x │ ├── wirecontacttest.py Spams terminal with messages: WirePM.cpp:85 go: Law2_ScGeom_WirePhys_WirePM::go - contact law
ok │ok │ ├── wirepackings.py
ok │ok │ └── wiretensiltest.py Spams terminal with messages: WirePM.cpp:85 go: Law2_ScGeom_WirePhys_WirePM::go - contact law
│ ├── adaptiveintegrator
OK │x │ ├── simple-scene-plot-NewtonIntegrator.py
OK │x │ └── simple-scene-plot-RungeKuttaCashKarp54.py
│ ├── agglomerate
ok │OK │ ├── compress.py
ok │OK │ ├── divide.py
ok │OK │ ├── makeCloud.py
x │OK │ └── simulation.py AttributeError: 'Body' object has no attribute 'agglomerate'
│ ├── baraban
OK │x │ ├── BicyclePedalEngine.py
OK │x │ ├── baraban.py
ok │x │ └── rotating-cylinder.py a little too slow
│ ├── bulldozer
OK │ok │ ├── bulldozer.py
OK │ok │ └── bulldozerVTK.py
│ ├── capillary
OK │ok?│ ├── capillar.py
│ │ └── liquidmigration
x │ok?│ └── showcase.py NameError: name 'LiqControl' is not defined ; I guess need to recompile with LIQMIGRATION or something like that
│ ├── capillaryLaplaceYoung
OK?│OK │ ├── CapillaryPhys-example.py
OK │ok?│ └── capillaryBridge.py
│ ├── chained-cylinders
OK?│x │ ├── CohesiveCylinderSphere.py UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead.
OK?│ok?│ ├── chained-cylinder-roots.py UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead.
OK?│ok?│ └── chained-cylinder-spring.py UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead.
│ ├── clumps
ok?│ok │ ├── addToClump-example.py SIGSEGV/SIGABRT handler called; gdb
OK │OK │ ├── apply-buoyancy-clumps.py
OK?│x │ ├── clump-hopper-test.py spams with messages: Body #282 vanished, erasing intr #282+#721!
OK │x │ ├── clump-hopper-viscoelastic.py
OK │x │ ├── clump-inbox-viscoelastic.py
OK │x │ ├── clump-viscoelastic.py
OK │ok │ ├── releaseFromClump-example.py
OK │ok │ ├── replaceByClumps-example.py
x │ok │ ├── save-load-clumps.py Assertion `member->isClumpMember()' failed. SIGSEGV/SIGABRT handler called; gdb
OK │ok │ └── triax-basic-with-clumps.py
│ ├── concrete
OK │ok │ ├── brazilian.py
OK │x │ ├── interaction-histogram.py
OK?│ok │ ├── periodic.py spams with messages: action: 0: strain=0.00169673, goal=1, cellGrow=1.71367
OK │ok │ ├── triax.py
OK │ok?│ ├── uniax-post.py
OK │OK │ └── uniax.py
│ ├── conveyor
OK │OK │ └── conveyor.py
│ ├── cylinders
OK │OK │ ├── bendingbeams.py
OK │OK │ ├── cylinder-cylinder.py
OK │OK │ ├── cylinderconnection-roots.py
OK │OK │ └── mikado.py
│ ├── deformableelem
x │x │ ├── Minimal.py the graphs are empty
ok │x │ ├── MinimalTensileTest.py
x │x │ ├── main.py I suppose this file is here by mistake ?
ok?│x │ ├── testDeformableBodies.py It works?? But prints this ERROR: DeformableCohesiveElement.hpp:49 operator<: Incomplete 'if' sequence
ok?│ok │ └── testDeformableBodies_pressure.py It works?? But prints this ERROR: DeformableCohesiveElement.hpp:49 operator<: Incomplete 'if' sequence
│ ├── grids
OK │OK │ ├── CohesiveGridConnectionSphere.py
OK │x │ ├── GridConnection_Spring.py
OK │x │ ├── Simple_GridConnection_Falling.py
OK │x │ └── Simple_Grid_Falling.py
│ ├── gts-horse
OK │ok │ ├── gts-horse.py
OK │OK │ ├── gts-operators.py
ok │ok │ ├── gts-random-pack-obb.py note: super slow
OK │OK │ └── gts-random-pack.py
│ ├── hourglass
OK │OK │ └── hourglass.py
│ ├── jointedCohesiveFrictionalPM
OK │ok │ ├── gravityBis.py
x │x │ ├── gravityLoading.py No such file or directory: 'parallellepiped_10_persistentPlane30Deg.spheres'
x │x │ ├── identificationSpheresOnJoint.py No such file or directory: 'parallellepiped_10.spheres'
x │x │ ├── packInGtsSurface.py spams messages: UnbalancedForce=-nan, rel stress nan
OK │ok │ └── testingJoint.py
│ ├── mortar
│ │ └── modelTests
ok?│ok │ ├── compression.py IndexError: No such interaction (after it goes through)
x │ok │ ├── failureEnvelope.py MortarMat.cpp:12 go: MortarMat not implemented for non-cohesive contacts
ok │ok │ └── shear.py
│ ├── not-working
x │x │ ├── Se3Interpolator.py NameError: name 'Se3Interpolator' is not defined
x │x │ ├── facet-topo.py Recompile with FACET_TOPO
?? │x │ ├── insertion-sort-collider.py something works, then SIGSEGV/SIGABRT handler called; gdb; in PersistentTriangulationCollider.cpp:110 the interaction==nullptr
x │x │ └── triax-identical-results.py NameError: name 'spheresToFile' is not defined
│ ├── oar
x │x │ └── sim.py KeyError: 'Invalid key: description.'
│ ├── packs
OK │OK │ └── packs.py
│ ├── pfacet
OK │x │ ├── gts-pfacet.py
OK │x │ ├── mesh-pfacet.py
OK │ok │ ├── pFacets_grids_spheres_interacting.py
OK │x │ └── pfacetcreators.py
│ ├── polyhedra
OK │x │ ├── ball.py
OK │x │ ├── clump.py
OK │x │ ├── free-fall.py
OK │x │ ├── horse.py
OK │ok │ ├── irregular.py
OK │x │ ├── sphere-interaction.py
OK │ok │ ├── splitter.py
│ │ ├── tests
ok?│x │ │ ├── interactinDetectionFactor.py
OK │x │ │ └── scGeom.py
OK │x │ ├── textExport.py
OK │x │ └── wall.py
│ ├── polyhedraBreak
OK │ok?│ └── uniaxial_compression.py
│ ├── ring2d
OK │x │ ├── ringCundallDamping.py
OK │x │ └── ringSimpleViscoelastic.py
│ ├── rod-penetration
ok │x │ └── model.py
│ ├── simple-scene
OK │ok │ ├── 2SpheresNormVisc.py
OK │ok │ ├── save-then-reload.py
OK │ok │ ├── simple-scene-default-engines.py
OK │x │ ├── simple-scene-energy-tracking.py
OK │x │ ├── simple-scene-plot.py
OK │OK │ └── simple-scene.py
│ ├── sph
x │x │ ├── dam_break.py AttributeError: No such attribute: KernFunctionPressure. , I guess must Recompile with SPH
x │x │ ├── sph_box.py AttributeError: No such attribute: h.
x │x │ ├── testKernelFunc.py AttributeError: No such attribute: KernFunctionPressure.
x │x │ ├── toystar.py AttributeError: No such attribute: h.
x │x │ └── watercolumn.py AttributeError: No such attribute: h.
│ ├── stl-gts
OK │OK │ └── gts-stl.py NOTE: apt install gmsh libgts-bin
│ ├── tesselationwrapper
OK │ok │ └── tesselationWrapper.py
│ ├── test
OK │ok │ ├── Damping_HM.py
│ │ ├── WireMatPM
OK │ok │ │ ├── net-2part-displ-unloading.py
ok │ok │ │ ├── net-2part-displ.py
x │ok │ │ └── net-2part-strain.py UniaxialStrainer::action(): Assertion `posIds.size()==posCoords.size()……… SIGSEGV/SIGABRT handler called; UniaxialStrainer.cpp:86: virtual void UniaxialStrainer::action(): Assertion posIds.size()==posCoords.size() failed.
│ │ ├── batch
x │x │ │ └── sim.py KeyError: 'Invalid key: description.'
OK │OK │ ├── beam-l6geom.py
ok │x │ ├── callback.py
OK │x │ ├── clump-facet.py
OK │x │ ├── clump.py
OK │ok?│ ├── clumpPack.py
OK │ok │ ├── collider-stride-triax.py
OK │ok │ ├── collider-stride.py
ok?│x │ ├── collider-sweep-simple.py
OK │ok?│ ├── combined-kinematic-engine.py
OK │x │ ├── energy.py
x │x │ ├── exact-rot-facet.py [with T = IGeomFunctor; typename boost::detail::sp_member_access<T>::type = IGeomFunctor*]: Assertion `px != 0' failed. SIGSEGV/SIGABRT handler called; gdb; the I->functorCache.geom==nullptr in Dispatching.cpp:129
x │x │ ├── exact-rot.py [with T = IGeomFunctor; typename boost::detail::sp_member_access<T>::type = IGeomFunctor*]: Assertion `px != 0' failed. SIGSEGV/SIGABRT handler called; gdb; the I->functorCache.geom==nullptr in Dispatching.cpp:129
ok │x │ ├── facet-box.py
OK │OK │ ├── facet-sphere-ViscElBasic-peri.py
OK │OK │ ├── facet-sphere-ViscElBasic.py
OK │ok │ ├── facet-sphere.py
OK │x │ ├── flat-collider.py (a bit slow, but ok)
ok?│x │ ├── force-move.py
OK │OK │ ├── force-network-video.py
x │OK │ ├── genCylLSM.py NOTE: apt install python-demgengeo ; InsertGenerator3D::seedParticles bbx: SIGSEGV/SIGABRT handler called; gdb; gdb; segfault appears inside gengeom function fit_3d_sphere_fn::operator() and InsertGenerator3D::fillIn(…), I guess that the arguments for calling it were prepared incorrectly.
x │ok?│ ├── helix.py script runs and is not crashing, but nothing happens
ok?│ok │ ├── interpolating-force.py
OK │ok │ ├── kinematic.py
OK │ok │ ├── mindlin.py
│ │ ├── multi
ok?│ok?│ │ └── multi.py refers to https://yade-dem.org/wiki/ScriptParametricStudy
OK │ok │ ├── pack-cloud.py
ok?│x │ ├── pack-inConvexPolyhedron.py
x │x │ ├── pack-predicates.py nothing happens, scene is empty
│ │ ├── paraview-spheres-solid-section
OK │ok │ │ ├── export_text.py
x │x │ │ └── pv_section.py NOTE: apt instal paraview-python ; AttributeError: Attribute UseInteractiveRenderingForSceenshots does not exist.
│ │ ├── performance
ok?│x │ │ └── checkPerf.py note: no visuals
OK │ok?│ ├── periodic-geom-compare.py
OK │ok │ ├── psd.py testing+plotting size distribution generated by makeCloud (scene is left empty).
x │x │ ├── qt4-attributes.py Error: already imported an Incompatible QT Binding: pyqt5
x │x │ ├── qt4-pyqglviewer.py ImportError: No module named PyQGLViewer
x │x │ ├── remove-body.py AttributeError: No such attribute: nBins
x │ok?│ ├── shear.py sp_member_access<T>::type = IGeomFunctor*: Assertion `px != 0' failed. SIGSEGV/SIGABRT handler called; gdb; the I->functorCache.geom==nullptr in Dispatching.cpp:129
OK │ok │ ├── sphere-sphere-ViscElBasic-peri.py
OK │x │ ├── subdomain-balancer.py
OK │x │ ├── test-sphere-facet-corner.py
OK?│OK │ ├── test-sphere-facet.py
x │x │ ├── test_Ip2_FrictMat_CpmMat_FrictPhys.py After collision there is error: InteractionLoop::action(): Assertion `!swap' failed. SIGSEGV/SIGABRT handler called; gdb, see: https://bugs.launchpad.net/yade/+bug/1475844
OK │ok │ ├── triax-basic.py
OK │ok │ ├── triax-cohesive.py
│ │ ├── unv-read
ok?│x │ │ ├── unvRead.py
x │x │ │ └── unvReadVTKExport.py TypeError: facet() got an unexpected keyword argument 'returnElementMap'
│ │ ├── vtk-exporter
ok │x │ │ └── vtkExporter.py
OK │ok │ ├── vtkPeriodicCell.py
OK │OK │ ├── wall.py
ok │ok │ └── wm3-wrap.py
│ ├── tetra
OK │OK │ ├── oneTetra.py
OK │OK │ ├── oneTetraPoly.py
OK │OK │ ├── twoTetras.py
OK │OK │ └── twoTetrasPoly.py
│ └── triax-tutorial
OK │OK ├── script-session1.py
OK │OK └── script-session2.py
│ │
│ ../doc/sphinx
│ │
│ └── tutorial
OK │OK ├── 01-bouncing-sphere.py
OK │OK ├── 02-gravity-deposition.py
OK │OK ├── 03-oedometric-test.py
ok?│OK ├── 04-periodic-simple-shear.py see: https://bugs.launchpad.net/yade/+bug/1634434
ok?│OK ├── 05-3d-postprocessing.py see: https://bugs.launchpad.net/yade/+bug/1621869
OK │OK ├── 06-periodic-triaxial-test.py
ok?│ok? ├── make-simulation-video.py
ok │x └── peri-triax.py looks like duplicate of 06-periodic-triaxial-test.py
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