File: simpleColorsNoPerformance.py

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# -*- encoding=utf-8 -*-
#
# This is the same simulation as examples/test/performance/checkPerf.py, but does not perform a benchmark.
# It can be used to see the --stdbenchmark simulation in the 3D view.

from yade import pack, export, geom, timing, bodiesHandling, math
from yade.math import Real
import time, numpy
if (math == sys.modules['math']):
	raise RuntimeError("To avoid precision problems avoid the native python math and use yade.math")

radRAD = Real('30.77')
nbIter = 7000
initIter = 1  # number of initial iterations excluded from performance check (e.g. Collider is initialised in first step therefore exclude first step from performance check)
tStartAll = time.time()
O.reset()
tc = Real('0.001')
en = Real('.003')
es = Real('.003')
frictionAngle = math.radiansHP1(35)
density = Real(2300)
defMat = O.materials.append(ViscElMat(density=density, frictionAngle=frictionAngle, tc=tc, en=en, et=es))

O.dt = Real('.1') * tc  # time step
rad = Real('0.5')  # particle radius
tolerance = Real('0.0001')

SpheresID = []
SpheresID += O.bodies.append(pack.regularHexa(pack.inSphere((Vector3(0, 0, 0)), rad), radius=rad / radRAD, gap=(rad / radRAD) / 2, material=defMat))

geometryParameters = bodiesHandling.spheresPackDimensions(SpheresID)
print(len(SpheresID))

floorId = []
floorId += O.bodies.append(geom.facetBox(geometryParameters['center'], geometryParameters['extends'] / 2 * Real('1.05'), material=defMat))  # Floor

#Calculate the mass of spheres
sphMass = getSpheresVolume() * density

iterPyRunnerPeriod = 100
# Create engines
O.engines = [
        ForceResetter(),
        InsertionSortCollider([Bo1_Sphere_Aabb(), Bo1_Facet_Aabb()]),
        InteractionLoop(
                [Ig2_Sphere_Sphere_ScGeom(), Ig2_Facet_Sphere_ScGeom()],
                [Ip2_ViscElMat_ViscElMat_ViscElPhys()],
                [Law2_ScGeom_ViscElPhys_Basic()],
        ),
        NewtonIntegrator(damping=0, gravity=[0, Real('-9.81'), 0]),
        PyRunner(dead=False, command='colorEnergyKinetic.go()', initRun=True, iterPeriod=iterPyRunnerPeriod, firstIterRun=iterPyRunnerPeriod - 1),
        PyRunner(dead=True, command='colorEnergyNormalForce.go()', initRun=True, iterPeriod=iterPyRunnerPeriod, firstIterRun=iterPyRunnerPeriod - 1),
]

print("number of bodies %d" % len(O.bodies))

if (opts.nogui == False):
	yade.qt.View()  # create a GUI view
	#Gl1_Sphere.stripes = True    # mark spheres with stripes
	rr = yade.qt.Renderer()  # get instance of the renderer
	#rr.intrAllWire = True        # draw wires
	#rr.intrPhys = True           # draw the normal forces between the spheres.
	rr.bgColor = Vector3(1, 1, 1)  # white background
	# If one needs to exactly copy camera position and settings between two different yade sessions, the following commands can be used:
	# https://yade-dem.org/doc/yade.qt.html#yade.qt._GLViewer.views
	v = yade.qt.views()[0]
	v.lookAt, v.viewDir, v.eyePosition, v.upVector = (
	        (1.4550, 1.4473, 4.8060), (-0.2770, -0.2842, -0.9178), (1.7320, 1.7315, 5.7239), (-0.08516, 0.9587, -0.2711)
	)
	print("Press o/p keys to adjust camera's focal length. (press h for help)")


# FIXME: we should have some nice general way for this.
# Spheres coloring
def colorScale(maxVal, val):
	import math
	gray = val / maxVal if maxVal != 0 else 1.0
	return [math.sqrt(gray), gray * gray, math.sin(gray * 2 * math.pi + 0.3)]


class SimpleColor:

	def __init__(self, exclude, function, O, maxV):
		self.exclude = exclude
		self.function = function
		self.O = O
		self.maxV = maxV  # use this to have same color scale on whole simulation.

	def go(self):
		maxValue = self.maxV if self.maxV else 0
		if (not self.maxV):
			for body in self.O.bodies:
				if (body.id not in self.exclude):
					maxValue = max(maxValue, self.function(body, self.O))
		for body in self.O.bodies:
			if (body.id not in self.exclude):
				color = colorScale(maxVal=maxValue, val=self.function(body, self.O))
				body.shape.color = color
		# print("maxValue = ",maxValue) # find the optimal value for self.maxV


def kineticEnergy(body, O):
	return (body.state.mass * body.state.vel.norm()**2) / 2


def totalForce(body, O):
	return O.forces.f(body.id).norm()


def totalMoment(body, O):
	return O.forces.m(body.id).norm()


excludeColoring = floorId
maxEKinValue = 0.2036816691496742
colorEnergyKinetic = SimpleColor(excludeColoring, kineticEnergy, O, maxEKinValue)
colorTotalForce = SimpleColor(excludeColoring, totalForce, O, None)
colorMoment = SimpleColor(excludeColoring, totalMoment, O, None)

# color spheres on start
colorEnergyKinetic.go()