1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 834 835 836 837 838 839 840 841 842 843 844 845 846 847 848 849 850 851 852 853 854 855 856 857 858 859 860 861 862 863 864 865 866 867 868 869 870 871 872 873 874 875 876 877 878 879 880 881 882 883 884 885 886 887 888 889 890 891 892 893 894 895 896 897 898 899 900 901 902 903 904 905 906 907 908 909 910 911 912 913 914 915 916 917 918 919 920 921 922 923 924 925 926 927 928 929 930 931 932 933 934 935 936 937 938 939 940 941 942 943 944 945 946 947 948 949 950 951 952 953 954 955 956 957 958 959 960 961 962 963 964 965 966 967 968 969 970 971 972 973 974 975 976 977 978 979 980 981 982 983 984 985 986 987 988 989 990 991 992 993 994 995 996 997 998 999 1000 1001 1002 1003 1004 1005 1006 1007 1008 1009 1010 1011 1012 1013 1014 1015 1016 1017 1018 1019 1020 1021 1022 1023 1024 1025 1026 1027 1028 1029 1030 1031 1032 1033 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 1044 1045 1046 1047 1048 1049 1050 1051 1052 1053 1054 1055 1056 1057 1058 1059 1060 1061 1062 1063 1064 1065 1066 1067 1068 1069 1070 1071 1072 1073 1074 1075 1076 1077 1078 1079 1080 1081 1082 1083 1084 1085 1086 1087 1088 1089 1090 1091 1092 1093 1094 1095 1096 1097 1098 1099 1100 1101 1102 1103 1104 1105 1106 1107 1108 1109 1110 1111 1112 1113 1114 1115 1116 1117 1118 1119 1120 1121 1122 1123 1124 1125 1126 1127 1128 1129 1130 1131 1132 1133 1134 1135 1136 1137 1138 1139 1140 1141 1142 1143 1144 1145 1146 1147 1148 1149 1150 1151 1152 1153 1154 1155 1156 1157 1158 1159 1160 1161 1162 1163 1164 1165 1166 1167 1168 1169 1170 1171 1172 1173 1174 1175 1176 1177 1178 1179 1180 1181 1182 1183 1184 1185 1186 1187 1188 1189 1190 1191 1192 1193 1194 1195 1196 1197 1198 1199 1200 1201 1202 1203 1204 1205 1206 1207 1208 1209 1210 1211 1212 1213 1214 1215 1216 1217 1218 1219 1220 1221 1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374 1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 1412 1413 1414 1415 1416 1417 1418 1419 1420 1421 1422 1423 1424 1425 1426 1427 1428 1429 1430 1431 1432 1433 1434 1435 1436 1437 1438 1439 1440 1441 1442 1443 1444 1445 1446 1447 1448 1449 1450 1451 1452 1453 1454 1455 1456 1457 1458 1459 1460 1461 1462 1463 1464 1465 1466 1467 1468 1469 1470 1471 1472 1473 1474 1475 1476 1477 1478 1479 1480 1481 1482 1483 1484 1485 1486 1487 1488 1489 1490 1491 1492 1493 1494 1495 1496 1497 1498 1499 1500 1501 1502 1503 1504 1505 1506 1507 1508 1509 1510 1511 1512 1513 1514 1515 1516 1517 1518 1519 1520 1521 1522 1523 1524 1525 1526 1527 1528 1529 1530 1531 1532 1533 1534 1535 1536 1537 1538 1539 1540 1541 1542 1543 1544 1545 1546 1547 1548 1549 1550 1551 1552 1553 1554 1555 1556 1557 1558 1559 1560 1561 1562 1563 1564 1565 1566 1567 1568 1569 1570 1571 1572 1573 1574 1575 1576 1577 1578 1579 1580 1581 1582 1583 1584 1585 1586 1587 1588 1589 1590 1591 1592 1593 1594 1595 1596 1597 1598 1599 1600 1601 1602 1603 1604 1605 1606 1607 1608 1609 1610 1611 1612 1613 1614 1615 1616 1617 1618 1619 1620 1621 1622 1623 1624 1625 1626 1627 1628 1629 1630 1631 1632 1633 1634 1635 1636 1637 1638 1639 1640 1641 1642 1643 1644 1645 1646 1647 1648 1649 1650 1651 1652 1653 1654 1655 1656 1657 1658 1659 1660 1661 1662 1663 1664 1665 1666 1667 1668 1669 1670 1671 1672 1673 1674 1675 1676 1677 1678 1679 1680 1681 1682 1683 1684 1685 1686 1687 1688 1689 1690 1691 1692 1693 1694 1695 1696 1697 1698 1699 1700 1701 1702 1703 1704 1705 1706 1707 1708 1709 1710 1711 1712 1713 1714 1715 1716 1717 1718 1719 1720 1721 1722 1723 1724 1725 1726 1727 1728 1729 1730 1731 1732 1733 1734 1735 1736 1737 1738 1739 1740 1741 1742 1743 1744 1745 1746 1747 1748 1749 1750 1751 1752 1753 1754 1755 1756 1757 1758 1759 1760 1761 1762 1763 1764 1765 1766 1767 1768 1769 1770 1771 1772 1773 1774 1775 1776 1777 1778 1779 1780 1781 1782 1783 1784 1785 1786 1787 1788 1789 1790 1791 1792 1793 1794 1795 1796 1797 1798 1799 1800 1801 1802 1803 1804 1805 1806 1807 1808 1809 1810 1811 1812 1813 1814 1815 1816 1817 1818 1819 1820 1821 1822 1823 1824 1825 1826 1827 1828 1829 1830 1831 1832 1833 1834 1835 1836 1837 1838 1839 1840 1841 1842 1843 1844 1845 1846 1847 1848 1849 1850 1851 1852 1853 1854 1855 1856 1857 1858 1859 1860 1861 1862 1863 1864 1865 1866 1867 1868 1869 1870 1871 1872 1873 1874 1875 1876 1877 1878 1879 1880 1881 1882 1883 1884 1885 1886 1887 1888 1889 1890 1891 1892 1893 1894 1895 1896 1897 1898 1899 1900 1901 1902 1903 1904 1905 1906 1907 1908 1909 1910 1911 1912 1913 1914 1915 1916 1917 1918 1919 1920 1921 1922 1923 1924 1925 1926 1927 1928 1929 1930 1931 1932 1933 1934 1935 1936 1937 1938 1939 1940 1941 1942 1943 1944 1945 1946 1947 1948 1949 1950 1951 1952 1953 1954 1955 1956 1957 1958 1959 1960 1961 1962 1963 1964 1965 1966 1967 1968 1969 1970 1971 1972 1973 1974 1975 1976 1977 1978 1979 1980 1981 1982 1983 1984 1985 1986 1987 1988 1989 1990 1991 1992 1993 1994 1995 1996 1997 1998 1999 2000 2001 2002 2003 2004 2005 2006 2007 2008 2009 2010 2011 2012 2013 2014 2015 2016 2017 2018 2019 2020 2021 2022 2023 2024 2025 2026 2027 2028 2029 2030 2031 2032 2033 2034 2035 2036 2037 2038 2039 2040 2041 2042 2043 2044 2045 2046 2047 2048 2049 2050 2051 2052 2053 2054 2055 2056 2057 2058 2059 2060 2061 2062 2063 2064 2065 2066 2067 2068 2069 2070 2071 2072 2073 2074 2075 2076 2077 2078 2079 2080 2081 2082 2083 2084 2085 2086 2087 2088 2089 2090 2091 2092 2093 2094 2095 2096 2097 2098 2099 2100 2101 2102 2103 2104 2105 2106 2107 2108 2109 2110 2111 2112 2113 2114 2115 2116 2117 2118 2119 2120 2121 2122 2123 2124 2125 2126 2127 2128 2129 2130 2131 2132 2133 2134 2135 2136 2137 2138 2139 2140 2141 2142 2143 2144 2145 2146 2147 2148 2149 2150 2151 2152 2153 2154 2155 2156 2157 2158 2159 2160 2161 2162 2163 2164 2165 2166 2167 2168 2169 2170 2171 2172 2173 2174 2175 2176 2177 2178 2179 2180 2181 2182 2183 2184 2185 2186 2187 2188 2189 2190 2191 2192 2193 2194 2195 2196 2197 2198 2199 2200 2201 2202 2203 2204 2205 2206 2207 2208 2209 2210 2211 2212 2213 2214 2215 2216 2217 2218 2219 2220 2221 2222 2223 2224 2225 2226 2227 2228 2229 2230 2231 2232 2233 2234 2235 2236 2237 2238 2239 2240 2241 2242 2243 2244 2245 2246 2247 2248 2249 2250 2251 2252 2253 2254 2255 2256 2257 2258 2259 2260 2261 2262 2263 2264 2265 2266 2267 2268 2269 2270 2271 2272 2273 2274 2275 2276 2277 2278 2279 2280 2281 2282 2283 2284 2285 2286 2287 2288 2289 2290 2291 2292 2293 2294 2295 2296 2297 2298 2299 2300 2301 2302 2303 2304 2305 2306 2307 2308 2309 2310 2311 2312 2313 2314 2315 2316 2317 2318 2319 2320 2321 2322 2323 2324 2325 2326 2327 2328 2329 2330 2331 2332 2333 2334 2335 2336 2337 2338 2339 2340 2341 2342 2343 2344 2345 2346 2347 2348 2349 2350 2351 2352 2353 2354 2355 2356 2357 2358 2359 2360 2361 2362 2363 2364 2365 2366 2367 2368 2369 2370
|
/*
* oifits.i -
*
* Support of OI-FITS file for Yorick + Yeti.
*
*-----------------------------------------------------------------------------
*
* Copyright (C) 2005 Eric Thi�baut, Cl�mentine B�chet, Julien Salmon.
* Copyright (C) 2006-2008 Eric Thi�baut <thiebaut@obs.univ-lyon1.fr>
*
* This file is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License version 2 as
* published by the Free Software Foundation.
*
* This file is distributed in the hope that it will be useful, but
* WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* General Public License for more details.
*
*-----------------------------------------------------------------------------
*
* $Id: oifits.i,v 1.7 2008/12/09 17:20:10 eric Exp eric $
* $Log: oifits.i,v $
* Revision 1.7 2008/12/09 17:20:10 eric
* - Fixed a bug in oifits_new_* when master is provided (thanks
* to Thibaut Paumard for this fix).
*
* Revision 1.6 2008/10/03 06:50:29 eric
* - Various fixes in oifits.i for creating/saving OI-FITS files (thanks
* to Sylvestre Lacour).
*
* Revision 1.5 2008/09/25 17:31:30 eric
* - Hack for FLAG column to deal with AMBER data ;-(
* - Table are now parsed in order to have a chance to get the
* correct number of wavelengths.
*
* Revision 1.4 2008/09/07 17:01:21 eric
* Massive rewrite to optimize the code, make it easier to read and
* let the users create OI-FITS data on the fly and save it to a
* file.
*
* Revision 1.3 2007/01/15 16:16:48 eric
* - Fixed address of the Free Software Foundation.
*
* Revision 1.2 2007/01/15 15:37:01 eric
* - Fixed bug with missing mandatory keywords.
* - Improved include/require paradigm.
* - New function oifits_random_normal.
* - Replaced "OIFITS" by "OI-FITS" in documentation
* and comments.
*
* Revision 1.1 2006/02/13 21:26:23 eric
* Initial revision
*/
/* OI-FITS is based on fits.i */
if (! is_func(fits_open)) include, "fits.i", 1;
/* OI-FITS requires hash tables provided by Yeti: */
if (! is_func(h_new)) include, "yeti.i", 1;
/*
* IMPORTANT
* =========
*
* OI-FITS public interface only consists in functions (with names starting
* with "oifits_") and opaque objects. The caller should never directly
* access to internals of theses opaque objects otherwise this could give
* raise to conflicts with the future evolution of the OI-FITS interface.
*
*
* IMPLEMENTATION NOTES
* ====================
*
* A set of OI-FITS data is memorized as a hash table, the 'master', with
* children hash tables, one for each data block (e.g. OI_TARGET,
* OI_WAVELENGTH, OI_VIS, ...).
*
* Structure of the 'master' hash table:
* master.__revn [integer] revision number
* master.__counter [integer] data block counter
* master.__array [string] names of OI_ARRAY data blocks
* master.__data [string] names of OI_VIS, OI_VIS2 and OI_T3 data
* blocks
* master.__errmsg [string] pending error message(s)
* master.__first [string] name of first data block
* master.__db# [hash] data blocks (# is an integer)
* master.__target [string] name of OI_TARGET data block
* master.__wavelength [string] names of OI_WAVELENGTH data blocks
* master.__clean [logical] true if update of internals not needed
*
* Structure of a data block:
* db.__nbaselines [integer] number of observed baselines
* db.__nwavelengths [integer] number of spectral channels
* db.__is_data [integer] this data block contains measurements
* db.__ins [string] name ("__db#) of related OI_WAVELENGTH in master
* db.__arr [string] name ("__db#) of related OI_ARRAY in master
* db.__self [string] name ("__db#) of this data block in its parent
* db.__index [integer] index of this data block
* db.__type [integer] data block type (see oifits_get_type)
* db.__next [string] name of next data block in same parent
* db.__class [string] data block class: "TARGET", or "VIS2", ...
* db.KEY column/keyword value (except OI_REVN -> revn)
* db.KEY_units units for KEY
*
* FITS BINTABLE are read as array of pointers:
*
* <-------- NCOLS ---------------->
* ^
* | | |
* | |<-- NCELLS -->|
* NROWS | |
* | | |
* | | |
* | | |
* V | |
*
*
* REFERENCES
* ==========
* [1] Pauls, T. A.; Young, J. S.; Cotton, W. D. & Monnier, J. D.: "A Data
* Exchange Standard for Optical (Visible/IR) Interferometry",
* Publications of the Astronomical Society of Pacific vol. 117,
* pp. 1255-1262 (2005).
*/
/*---------------------------------------------------------------------------*/
func oifits_new(nil)
/* DOCUMENT oifits_new()
Creates a new OI-FITS master object.
SEE ALSO: oifits_load, oifits_save, oifits_insert.
*/
{
if (! is_void(nil)) error, "expecting nil argument";
return h_new(__counter = 0, __clean = 1n);
}
/* steps:
* 1. figure out NBASELINES and NWAVELENGTHS
* 2. create default (zero) structure
* 3. fill with provided data
* 4. complete missing data (e.g., ucoord, vcoord)
*/
func oifits_insert(master, ..)
/* DOCUMENT oifits_insert, master, db1, db2, ...;
-or- oifits_insert(master, db1, db2, ...);
Inserts new OI-FITS data-blocks DB1, DB2 etc into OI-FITS instance
MASTER. DBn are data-blocks as returned by one of the oifits_new_*
constructors (which see). DBn can also be data-blocks from another
OI-FITS instance, in this case the contents of the source data-block
is cloned into a new data-block since OI-FITS instances cannot share
data. When called as a function, the returned value is MASTER.
EXAMPLE:
Create a new OI-FITS instance and save it into a file:
master = oifits_new();
target_db = oifits_new_target(target = ...);
wavelength_db = oifits_new_wavelength(eff_wave = ...);
oifits_insert, master, db1;
oifits_insert, master, db2;
...;
oifits_update, master;
oifits_save, master, filename;
SEE ALSO: oifits_get_type, oifits_load, oifits_save, oifits_new
oifits_new_target, oifits_new_array, oifits_new_wavelength,
oifits_new_vis, oifits_new_vis2, oifits_new_t3. */
{
local db;
counter = master.__counter;
if (is_void(counter)) {
counter = 0L;
}
while (more_args()) {
eq_nocopy, db, next_arg();
if (! is_hash(db) || ! h_has(db, "__class") || ! h_has(db, "__type")
|| ! h_has(db, "__is_data") || ! h_has(db, "__nbaselines")
|| ! h_has(db, "__nwavelengths")) {
error, ("invalid input data-block"
+ " (use one of the oifits_new_* constructors)");
}
if (h_has(db, "__self")) {
/* Source data-block is already owned, make a private copy. */
cpy = h_new();
_oifits_copy_member, cpy, db, "__type";
_oifits_copy_member, cpy, db, "__class";
_oifits_copy_member, cpy, db, "__is_data";
_oifits_copy_member, cpy, db, "__nbaselines";
_oifits_copy_member, cpy, db, "__nwavelengths";
for (key = h_first(db); key; key = h_next(db, key)) {
if (strpart(key, 1:2) != "__") {
_oifits_copy_member, cpy, db, key;
}
}
db = cpy; /* this is a simple reference for non-array object */
}
/* Get name for new data block and insert in master. */
do {
self = swrite(format="__db%d", ++counter);
} while (h_has(master, self));
h_set, db, __next = master.__first, __self = self, __index=counter;
h_set, master, __counter = counter, self, db, __first = self, __clean = 0n;
}
return master;
}
func oifits_update(master, errmode=, revn=, force=)
/* DOCUMENT oifits_update(master)
Update internals of OI-FITS main object MASTER and return it.
If keyword ERRMODE is true, any inconsistency will be printed out
and an error will be raised.
Keyword REVN can be set to the value of the new revision number of
OI-FITS format.
Keyword FORCE can be set true to force recomputation of internal cache
and links even if it is not necessary.
This function _must_ be called after any modification of MASTER
(e.g. oifits_insert). The finalization consists in:
- (re)building chained list of data-blocks (master.__first,
db.__next, ...)
- (re)building lists of OI_ARRAY, OI_TARGET, ..., data-blocks
- linking data to related wavelength and array blocks
- supplying default FLAG
- (NOT YET DONE) compute missing u-v coordinates
SEE ALSO: oifits_new, oifits_insert, oifits_load.
*/
{
/* Fast shortcut. */
if (master.__clean && ! force) {
return master;
}
/* Transfer stack of internal error messages. */
extern _oifits_error_stack;
local _oifits_error_count;
_oifits_error_count = 0;
_oifits_error_stack = h_pop(master, "__errmsg");
/* Extract and re-order list of OI-FITS datablocks, then rebuild the list
of all datablocks. */
key_list = h_keys(master);
if (! numberof(key_list)) return master;
db_list = key_list(where(strgrep("^__db[0-9]+$", key_list)(2,) >= 0));
if (! (ndb = numberof(db_list))) return master;
db_index = array(long, ndb);
if (sread(db_list, format="__db%d", db_index) != ndb) {
error, "bug or corrupted opaque OI-FITS object";
}
db_list = db_list(sort(db_index));
/* First pass to get revision numbers and build chained list of
datablocks. */
counter = max(db_index);
prev = [];
db_revn = array(long, ndb);
for (j=1 ; j<=ndb ; ++j) {
key = db_list(j);
db = master(key);
if (! db) {
/* should never happens, however... */
h_pop, master, key;
continue;
}
if (is_hash(prev)) {
h_set, prev, __next=key;
} else {
h_set, master, __first=key;
}
h_pop, db, "__next";
prev = db;
r = db.revn;
if (! is_integer(r) || ! is_scalar(r) || r < 1 || r > _OIFITS_REVN_MAX) {
if (_oifits_error("bad/missing OI_REVN for data block %d", db.__index)) {
error, _oifits_error_stack(1);
}
} else {
db_revn(j) = r;
}
}
/* Check new revision number. */
if (is_void(revn)) {
revn = max(db_revn);
} else if (! is_integer(revn) || ! is_scalar(revn) || revn < 1) {
error, "bad value for REVN keyword";
} else if (revn > _OIFITS_REVN_MAX) {
error, swrite(format="unsupported version of OI-FITS format (REVN = %d)",
revn);
} else if (revn < max(db_revn)) {
error, "decreasing revision number is not allowed";
} else {
revn = long(revn);
}
/* Build links and fix datablocks. */
data_list = [];
array_list = [];
target_list = [];
wavelength_list = [];
ins_table = h_new();
arr_table = h_new();
for (key = master.__first ; key ; key = db.__next) {
db = master(key);
/* Get OI-FITS type and instanciate class-specific datablock members. */
type = db.__type;
if (is_integer(type) && is_scalar(type) &&
1 <= type && type <= numberof(_OIFITS_DATABLOCK_CLASS)) {
type = long(type);
class = _OIFITS_DATABLOCK_CLASS(type);
} else {
if (_oifits_error("bad OI-FITS type for data block %d", db.__index)) {
error, _oifits_error_stack(1);
}
continue;
}
is_data = (type == OIFITS_TYPE_VIS ||
type == OIFITS_TYPE_VIS2 ||
type == OIFITS_TYPE_T3);
h_set, db, revn=revn,
__self=key, __type=type, __class=class, __is_data=is_data;
/* Check INSNAME and build table of OI_WAVELENGTH datablocks. */
if (is_data || type == OIFITS_TYPE_WAVELENGTH) {
insname = db.insname;
if (! is_string(insname) || ! is_scalar(insname)) {
if (_oifits_error("bad/missing INSNAME for data block %d",
db.__index)) {
error, _oifits_error_stack(1);
}
continue;
}
insname = oifits_fix_name(insname);
h_set, db, insname=insname;
if (type == OIFITS_TYPE_WAVELENGTH) {
if (h_has(ins_table, insname)) {
if (_oifits_error("too many OI_WAVELENGTH blocks with INSNAME = '%s'",
insname)) {
error, _oifits_error_stack(1);
}
} else {
h_set, ins_table, insname, key;
}
}
}
/* Check ARRNAME and build table of OI_ARRAY datablocks. */
if (is_data || type == OIFITS_TYPE_ARRAY) {
arrname = db.arrname;
if (is_string(arrname) && is_scalar(arrname)) {
/* remove trailing spaces and register ARRNAME */
arrname = oifits_fix_name(arrname);
h_set, db, arrname=arrname;
} else if (type == OIFITS_TYPE_ARRAY || ! is_void(arrname)) {
if (_oifits_error("bad/missing ARRNAME for data block %d",
db.__index)) {
error, _oifits_error_stack(1);
}
continue;
}
if (type == OIFITS_TYPE_ARRAY) {
if (h_has(arr_table, arrname)) {
if (_oifits_error("too many OI_ARRAY blocks with ARRNAME = '%s'",
arrname)) {
error, _oifits_error_stack(1);
}
} else {
h_set, arr_table, arrname, key;
}
}
}
/* Grow list of target/data. */
if (type == OIFITS_TYPE_TARGET) {
grow, target_list, key;
} else if (type == OIFITS_TYPE_ARRAY) {
grow, array_list, key;
} else if (type == OIFITS_TYPE_WAVELENGTH) {
grow, wavelength_list, key;
} else {
grow, data_list, key;
}
}
/* Deal with having more than one TARGET datablock. */
n = numberof(target_list);
if (n == 0) {
if (_oifits_error("missing mandatory OI_TARGET datablock")) {
error, _oifits_error_stack(1);
}
} else if (n > 1) {
/* Compact all OI_TARGET datablocks into a single one. */
target = master(target_list(1));
member_list = _oifits_classdef_column("TARGET", revn).member;
m = numberof(member_list);
for (j=2 ; j<=n ; ++j) {
db = h_pop(master, target_list(j));
for (i=1 ; i<=m ; ++i) {
member = member_list(j);
h_set, target, member, grow(target(member), db(member));
}
}
target_list = target_list(1);
}
/* Fix internal links. */
nil = [];
for (key = master.__first ; key ; key = db.__next) {
db = master(key);
insname = db.insname;
ins_lnk = (insname ? ins_table(db.insname) : nil);
arrname = db.arrname;
arr_lnk = (arrname ? arr_table(db.arrname) : nil);
h_set, db, __ins=ins_lnk, __arr=arr_lnk;
if (is_void(ins_lnk) && (db.__is_data ||
db.__type == OIFITS_TYPE_WAVELENGTH) &&
_oifits_error("bad/missing INSNAME for data block %d", db.__index)) {
error, _oifits_error_stack(1);
}
if (db.__is_data && ! is_void(ins_lnk) &&
master(ins_lnk).__nwavelengths != db.__nwavelengths) {
if (_oifits_error("inconsistent number of wavelengths for data block %d",
db.__index)) {
error, _oifits_error_stack(1);
}
h_pop, db, "__ins";
}
if (is_void(arr_lnk) && (db.__is_data || db.__type == OIFITS_TYPE_ARRAY)) {
write, format="WARNING: no ARRNAME for data block %d\n", db.__index;
}
}
/* Instanciate members of MASTER. */
h_set, master,
__revn = revn,
__array = array_list,
__wavelength = wavelength_list,
__data = data_list,
__target = target_list,
__counter = counter,
__clean = 1n;
if (_oifits_error_count) {
h_set, master, "__errmsg", _oifits_error_stack;
if (errmode) {
write, format="*** ERROR: %s\n", _oifits_error_stack;
error, "too many errors";
}
}
return master;
}
/*---------------------------------------------------------------------------*/
/* CONSTRUCTORS FOR ALL DATA-BLOCK TYPES */
/* IMPORTANT: all units are the one of OI-FITS standard. */
func oifits_new_target(master,
revn=,
target_id=,
target=,
raep0=,
decep0=,
equinox=,
ra_err=,
dec_err=,
sysvel=,
veltyp=,
veldef=,
pmra=,
pmdec=,
pmra_err=,
pmdec_err=,
parallax=,
para_err=,
spectyp=)
/* DOCUMENT db = oifits_new_target(key1 = value1, ...);
-or- db = oifits_new_target(master, key1 = value1, ...);
-or- oifits_new_target, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_TARGET. If MASTER is
non-nil, it must be an existing OI-FITS master instance to store the new
data-block (in this case the returned value can be ignored). All members
of DB are specified by keywords (KEY1 = VALUE1, KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_TARGET
data-block are:
Keyword Units Description
-------------------------------------------------------------------------
revn revision number (default is last version)
target_id index number
target target name
raep0 deg RA at mean equinox
decep0 deg DEC at mean equinox
equinox yr equinox
ra_err deg error in RA at mean equinox
dec_err deg error in DEC at mean equinox
sysvel m/s systemic radial velocity
veltyp reference for radial velocity ("RADIO" or "OPTICAL")
veldef definition of radial velocity ("SR", "HELIOCEN",
"BARYCENT", "GEOCENTR", "TOPOCENT", or "UNKNOWN")
pmra deg/yr proper motion in RA
pmdec deg/yr proper motion in DEC
pmra_err deg/yr error of proper motion in RA
pmdec_err deg/yr error of proper motion in DEC
parallax deg parallax
para_err deg error in parallax
spectyp spectral type
-------------------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new,
oifits_new_array, oifits_new_wavelength,
oifits_new_vis, oifits_new_vis2, oifits_new_t3. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_TARGET,
h_new(revn = revn,
target_id = target_id,
target = target,
raep0 = raep0,
decep0 = decep0,
equinox = equinox,
ra_err = ra_err,
dec_err = dec_err,
sysvel = sysvel,
veltyp = veltyp,
veldef = veldef,
pmra = pmra,
pmdec = pmdec,
pmra_err = pmra_err,
pmdec_err = pmdec_err,
parallax = parallax,
para_err = para_err,
spectyp = spectyp));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
func oifits_new_array(master,
revn=,
arrname=,
frame=,
arrayx=,
arrayy=,
arrayz=,
tel_name=,
sta_name=,
sta_index=,
diameter=,
staxyz=)
/* DOCUMENT db = oifits_new_array(key1 = value1, ...);
-or- db = oifits_new_array(master, key1 = value1, ...);
-or- oifits_new_array, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_ARRAY (position of
telescopes). If MASTER is non-nil, it must be an existing OI-FITS master
instance to store the new data-block (in this case the returned value can
be ignored). All members of DB are specified by keywords (KEY1 = VALUE1,
KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_ARRAY
data-block are:
Keyword Units Description
---------------------------------------------------------------
revn revision number (default is last version)
arrname array name for cross-referencing
frame coordinate frame
arrayx m array center X-coordinate
arrayy m array center Y-coordinate
arrayz m array center Z-coordinate
tel_name telescope name
sta_name station name
sta_index station index
diameter m element diameter
staxyz m station coordinates relative to array center
---------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new, oifits_new_target,
oifits_new_wavelength, oifits_new_vis, oifits_new_vis2,
oifits_new_t3. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_ARRAY,
h_new(revn = revn,
arrname = arrname,
frame = frame,
arrayx = arrayx,
arrayy = arrayy,
arrayz = arrayz,
tel_name = tel_name,
sta_name = sta_name,
sta_index = sta_index,
diameter = diameter,
staxyz = staxyz));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
func oifits_new_wavelength(master,
revn=,
insname=,
eff_wave=,
eff_band=)
/* DOCUMENT db = oifits_new_array(key1 = value1, ...);
-or- db = oifits_new_array(master, key1 = value1, ...);
-or- oifits_new_array, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_WAVELENGTH (spectral
channels). If MASTER is non-nil, it must be an existing OI-FITS
master instance to store the new data-block (in this case the returned
value can be ignored). All members of DB are specified by keywords
(KEY1 = VALUE1, KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_WAVELENGTH
data-block are:
Keyword Units Description
------------------------------------------------------------
revn revision number (default is last version)
insname name of detector for cross-referencing
eff_wave m effective wavelength of channel
eff_band m effective bandpass of channel
------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new, oifits_new_array,
oifits_new_target, oifits_new_vis, oifits_new_vis2,
oifits_new_t3. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_WAVELENGTH,
h_new(revn = revn,
insname = insname,
eff_wave = eff_wave,
eff_band = eff_band));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
func oifits_new_vis(master,
revn=,
date_obs=,
arrname=,
insname=,
target_id=,
time=,
mjd=,
int_time=,
visamp=,
visamperr=,
visphi=,
visphierr=,
ucoord=,
vcoord=,
sta_index=,
flag=)
/* DOCUMENT db = oifits_new_vis(key1 = value1, ...);
-or- db = oifits_new_vis(master, key1 = value1, ...);
-or- oifits_new_vis, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_VIS (complex visibility). If
MASTER is non-nil, it must be an existing OI-FITS master instance to
store the new data-block (in this case the returned value can be
ignored). All members of DB are specified by keywords (KEY1 = VALUE1,
KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_VIS data-block
are:
Keyword Units Description
------------------------------------------------------------
revn revision number (default is last version)
date_obs UTC start date of observations
arrname name of corresponding array
insname name of correspondingdetector
target_id target number as index into OI_TARGET table
time s UTC time of observation
mjd day modified Julian Day
int_time s integration time
vis2data squared visibility
vis2err error in squared visibility
ucoord m U coordinate of the data
vcoord m V coordinate of the data
sta_index station numbers contributing to the data
flag flag
------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new, oifits_new_array,
oifits_new_target, oifits_new_wavelength, oifits_new_vis2,
oifits_new_t3. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_VIS,
h_new(revn = revn,
date_obs = date_obs,
arrname = arrname,
insname = insname,
target_id = target_id,
time = time,
mjd = mjd,
int_time = int_time,
visamp = visamp,
visamperr = visamperr,
visphi = visphi,
visphierr = visphierr,
ucoord = ucoord,
vcoord = vcoord,
sta_index = sta_index,
flag = flag));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
func oifits_new_vis2(master,
revn=,
date_obs=,
arrname=,
insname=,
target_id=,
time=,
mjd=,
int_time=,
vis2data=,
vis2err=,
ucoord=,
vcoord=,
sta_index=,
flag=)
/* DOCUMENT db = oifits_new_vis2(key1 = value1, ...);
-or- db = oifits_new_vis2(master, key1 = value1, ...);
-or- oifits_new_vis2, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_VIS2 (squared visibility
data). If MASTER is non-nil, it must be an existing OI-FITS master
instance to store the new data-block (in this case the returned value can
be ignored). All members of DB are specified by keywords (KEY1 = VALUE1,
KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_VIS2
data-block are:
Keyword Units Description
--------------------------------------------------------------
revn revision number (default is last version)
date_obs UTC start date of observations
arrname name of corresponding array
insname name of correspondingdetector
target_id target number as index into OI_TARGET table
time s UTC time of observation
mjd day modified Julian Day
int_time s integration time
vis2data squared visibility
vis2err error in squared visibility
ucoord m U coordinate of the data
vcoord m V coordinate of the data
sta_index station numbers contributing to the data
flag flag
--------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new, oifits_new_array,
oifits_new_target, oifits_new_wavelength, oifits_new_vis,
oifits_new_t3. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_VIS2,
h_new(revn = revn,
date_obs = date_obs,
arrname = arrname,
insname = insname,
target_id = target_id,
time = time,
mjd = mjd,
int_time = int_time,
vis2data = vis2data,
vis2err = vis2err,
ucoord = ucoord,
vcoord = vcoord,
sta_index = sta_index,
flag = flag));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
func oifits_new_t3(master,
revn=,
date_obs=,
arrname=,
insname=,
target_id=,
time=,
mjd=,
int_time=,
t3amp=,
t3amperr=,
t3phi=,
t3phierr=,
u1coord=,
v1coord=,
u2coord=,
v2coord=,
sta_index=,
flag=)
/* DOCUMENT db = oifits_new_t3(key1 = value1, ...);
-or- db = oifits_new_t3(master, key1 = value1, ...);
-or- oifits_new_t3, master, key1 = value1, ...;
Creates a new OI-FITS data-block of type OI_T3 (bispectrum or triple
correlation data). If MASTER is non-nil, it must be an existing OI-FITS
master instance to store the new data-block (in this case the returned
value can be ignored). All members of DB are specified by keywords (KEY1
= VALUE1, KEY2 = VALUE2, etc).
As of revision 1 of OI-FITS standard, the members of an OI_T3 data-block
are:
Keyword Units Description
--------------------------------------------------------------
revn revision number (default is last version)
date_obs UTC start date of observations
arrname name of corresponding array
insname name of correspondingdetector
target_id target number as index into OI_TARGET table
time s UTC time of observation
mjd day modified Julian Day
int_time s integration time
t3amp triple product amplitude
t3amperr error in triple product amplitude
t3phi deg triple product phase
t3phierr deg error in triple product phase
u1coord m U coordinate of baseline AB of the triangle
v1coord m V coordinate of baseline AB of the triangle
u2coord m U coordinate of baseline BC of the triangle
v2coord m V coordinate of baseline BC of the triangle
sta_index station numbers contributing to the data
flag flag
--------------------------------------------------------------
SEE ALSO: oifits_insert, oifits_get, oifits_new, oifits_new_array,
oifits_new_target, oifits_new_wavelength, oifits_new_vis,
oifits_new_vis2. */
{
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_stop;
db = _oifits_datablock_builder(OIFITS_TYPE_T3,
h_new(revn = revn,
date_obs = date_obs,
arrname = arrname,
insname = insname,
target_id = target_id,
time = time,
mjd = mjd,
int_time = int_time,
t3amp = t3amp,
t3amperr = t3amperr,
t3phi = t3phi,
t3phierr = t3phierr,
u1coord = u1coord,
v1coord = v1coord,
u2coord = u2coord,
v2coord = v2coord,
sta_index = sta_index,
flag = flag));
if (numberof(_oifits_error_stack)) {
error, _oifits_error_stack(1);
}
if (master) {
oifits_insert, master, db;
}
return db;
}
/* NOTE: To simplify the code of the instance builder, we heavily rely on
class definition tables. This means that consistency of these tables is
assumed and must be asserted at initialization time when _oifits_init is
called. */
func _oifits_datablock_builder(type, src, extname, hdu)
/**DOCUMENT db = _oifits_datablock_builder(type, tbl);
-or- db = _oifits_datablock_builder(type, fh, extname, hdu);
Returns an instanciated OI-FITS data-block with given TYPE (see
oifits_get_type) and with contents taken from hash-table TBL or read from
OI-FITS file handle FH. In the later case, EXTNAME and HDU are the FITS
extension name and header-data unit number.
This private routine is intended to centralize most of the checkings to
insure consistent definitions of OI-FITS data-blocks.
In case of error, an empty result is returned. However whether the
function immediately returns or not depends on the _oifits_on_error
function which can be redefined (e.g. to use built-in "error" function)
prior to calling _oifits_datablock_builder. The stack of error messages
is stored in external variable _oifits_error_stack.
SEE ALSO: oifits_insert, oifits_new_target, oifits_new_array,
oifits_new_wavelength, oifits_new_vis, oifits_new_vis2,
oifits_new_t3. */
{
/* Clear error stack. */
extern _oifits_error_stack;
_oifits_error_count = 0;
_oifits_error_stack = [];
/* Get revision number. */
reading = (! is_void(extname));
if (reading) {
revn = fits_get(src, "OI_REVN");
} else {
revn = h_get(src, "revn");
}
if (_oifits_get_integer_scalar(revn, _OIFITS_REVN_DEFAULT)
|| revn < 1 || revn > _OIFITS_REVN_MAX) {
_oifits_error, "unrecognized revision of the OI-FITS format";
return;
}
/* Get datablock type. */
if (_oifits_get_integer_scalar(type) || type < 1
|| type > numberof(_OIFITS_DATABLOCK_CLASS)) {
_oifits_error, "bad OI-FITS data block type";
return;
}
class = _OIFITS_DATABLOCK_CLASS(type);
is_data = (type == OIFITS_TYPE_VIS ||
type == OIFITS_TYPE_VIS2 ||
type == OIFITS_TYPE_T3);
/* If datablock contents is to be read from OI-FITS file, read all
the columns of the binary table and build a hash table for fast
linking of the column index given its name.*/
if (reading) {
ptr = fits_read_bintable(src);
ttype = h_new();
for (i = numberof(ptr); i >= 1; --i) {
name = fits_get(src, swrite(format="TTYPE%d", i));
if (structof(name) == string) {
h_set, ttype, oifits_fix_name(name), i;
}
}
}
/* Setup new hash table to store the OI-FITS datablock. */
db = h_new(__class = class, __type = type, __is_data = is_data,
revn = revn);
/* Instanciate data-block object from header part of HDU. */
local table, value; /* for parsing class definition tables */
eq_nocopy, table, _oifits_classdef_header(class, revn);
for (j = numberof(table); j >= 2 /* omit 1st line, i.e. OI_REVN */; --j) {
/* Parse table entry. */
member = table(j).member;
keyword = table(j).keyword;
units = table(j).units;
comment = table(j).comment;
multiplier = table(j).multiplier;
ctype = table(j).ctype;
/* Prepare for error messages. */
if (reading) {
what = swrite(format="keyword '%s' in %s (HDU %d)",
keyword, extname, hdu);
} else {
what = swrite(format="member '%s' for %s",
member, class);
}
/* Get value of keyword and check its data type and dimension
list before memorizing it. */
if (reading) {
value = fits_get(src, keyword);
} else {
eq_nocopy, value, h_get(src, member);
}
if (! is_scalar(value)) {
if (is_void(value)) {
if (multiplier &&
_oifits_error("missing mandatory %s", what)) {
return;
} else {
continue;
}
} else {
if (_oifits_error("expecting a scalar for %s", what)) {
return;
} else {
continue;
}
}
}
if (_oifits_datablock_builder_fix_type(ctype, value)) {
if (_oifits_error("bad data type for %s", what)) {
return;
} else {
continue;
}
}
h_set, db, member, value;
}
/* Instanciate data-block object from data (table) part of HDU. */
local table, value; /* for parsing class definition tables */
nrows = 0; /* we don't know yet the number of input rows */
nwavelengths = 0; /* number of spectral bandwidths */
eq_nocopy, table, _oifits_classdef_column(class, revn);
missing = array(int, numberof(table));
for (j = 1 ; j <= numberof(table); ++j) { /* <=== BEWARE ORDER IS IMPORTANT!!! */
/* Parse table entry. */
member = table(j).member;
keyword = table(j).keyword;
units = table(j).units;
comment = table(j).comment;
multiplier = table(j).multiplier;
ctype = table(j).ctype;
/* Prepare for error messages. */
if (reading) {
what = swrite(format="column '%s' in %s (HDU %d)",
keyword, extname, hdu);
} else {
what = swrite(format="member '%s' for %s",
member, class);
}
/* Get value of field. */
if (reading) {
i = ttype(keyword);
if (is_void(i) || is_void(*ptr(i))) {
missing(j) = 1n;
continue;
}
eq_nocopy, value, *ptr(i);
} else {
eq_nocopy, value, h_get(src, member);
if (is_void(value)) {
missing(j) = 1n;
continue;
}
}
/* Check and fix data type. */
if (_oifits_datablock_builder_fix_type(ctype, value)) {
if (_oifits_error("bad data type for %s", what)) {
return;
} else {
continue;
}
}
/* Check correctness of dimension list. */
dims = dimsof(value);
ndims = dims(1);
if (ndims > 2) {
if (_oifits_error("too many dimensions for %s", what)) {
return;
} else {
continue;
}
}
nrows1 = (ndims >= 1 ? dims(2) : 1);
ncells = (ndims >= 2 ? dims(3) : 1);
if (nrows) {
if (nrows1 != nrows) {
if (_oifits_error("bad number of rows for %s", what)) {
return;
} else {
continue;
}
}
} else {
nrows = nrows1;
}
if (multiplier < 0) {
/* Number of cells is proportional to the number of spectral
channels. */
multiplier = -multiplier;
if (! nwavelengths && ncells % multiplier == 0) {
nwavelengths = ncells/multiplier;
}
err = (ncells != multiplier*nwavelengths);
if (err && keyword == "FLAG" && ncells == 1) {
/* Hack for AMBER data ;-( */
err = 0n;
value = value(.., -:1:multiplier*nwavelengths);
}
} else {
err = (is_string(value) ? ncells != 1 : ncells != multiplier);
}
if (err) {
if (_oifits_error("bad number of cells for %s", what)) {
return;
} else {
continue;
}
}
/* Memorize datablock member. */
if (h_has(db, member)) {
if (_oifits_error("multiple definitions for %s", what)) {
return;
} else {
continue;
}
}
h_set, db, member, value;
/* Get units for that column/member. */
member_units = member + "_units";
if (reading) {
given_units = fits_get(src, swrite(format="TUNIT%d", i));
} else {
given_units = h_get(src, member_units);
}
if (is_void(given_units)) {
given_units = units;
}
if (structof(given_units) == string && strlen(given_units) &&
given_units != "-") {
h_set, db, member_units, given_units;
} else {
h_pop, db, member_units;
}
}
/* Fix number of baselines and spectral channels. */
if (is_data) {
nbaselines = nrows;
} else {
nbaselines = 0;
if (type == OIFITS_TYPE_WAVELENGTH) {
nwavelengths = nrows;
}
}
h_set, db, __nbaselines = nbaselines, __nwavelengths = nwavelengths;
/* Deal with missing members (must be done at the end). */
if (anyof(missing)) {
missing = where(missing);
eq_nocopy, table, _oifits_classdef_column(db.__class, revn);
for (j = numberof(missing); j >= 1; --j) {
k = missing(j);
member = table(k).member;
if (member == "flag" && nbaselines >= 1 && nwavelengths >= 1) {
h_set, db, flag = array(0n, nbaselines, nwavelengths);
} else {
if (reading) {
keyword = table(k).keyword;
what = swrite(format="column '%s' in %s (HDU %d)",
keyword, extname, hdu);
} else {
what = swrite(format="member '%s' for %s",
member, class);
}
if (_oifits_error("missing mandatory %s", what)) {
return;
} else {
continue;
}
}
}
}
if (_oifits_error_count == 0) {
return db;
}
}
func _oifits_datablock_builder_fix_type(ctype, &value)
{
s = structof(value);
if (ctype == _OIFITS_CTYPE_REAL) {
if (s == double) {
return 0;
}
if (s == float || s == long || s == int ||
s == short || s == char) {
value = double(value);
return 0;
}
return -1;
}
if (ctype == _OIFITS_CTYPE_INTEGER) {
if (s == long) {
return 0;
}
if (s == int || s == short || s == char) {
value = long(value);
return 0;
}
return -1;
}
if (ctype == _OIFITS_CTYPE_STRING) {
return (s == string ? 0 : -1);
}
if (ctype == _OIFITS_CTYPE_LOGICAL) {
return (s == int ? 0 : -1);
}
return -1;
}
/*---------------------------------------------------------------------------*/
/* LOADING/SAVING AN OI-FITS FILE */
func oifits_load(filename, quiet=, errmode=)
/* DOCUMENT master = oifits_load(filename);
Returns an opaque handle with the contents of OI-FITS data file FILENAME.
Keyword ERRMODE can be set to specify error reporting in oifits_update;
the default is ERRMODE=1.
SEE ALSO: oifits_save, oifits_new, oifits_insert, oifits_update.
*/
{
/* Setup for error management. */
local _oifits_error_stack;
_oifits_on_error = _oifits_on_error_push;
/* Load the data from the FITS file. */
if (is_void(errmode)) errmode = 1n;
fh = fits_open(filename);
master = oifits_new();
counter = 0;
while (! fits_eof(fh)) {
hdu = fits_current_hdu(fh);
xtension = fits_get_xtension(fh);
nbytes = fits_get_data_size(fh);
skip = 1n;
if (xtension == "BINTABLE") {
extname = fits_get(fh, "EXTNAME");
if (structof(extname) == string) {
extname = oifits_fix_name(extname);
type = _OIFITS_TYPE_TABLE(extname);
if (! is_void(type)) {
skip = 0n;
if (! quiet) {
write, format="loading %s extension data from unit %d\n",
extname, hdu;
}
db = _oifits_datablock_builder(type, fh, extname, hdu);
if (! is_void(db)) {
oifits_insert, master, db;
}
}
}
}
if (skip && ! quiet) {
write, format="skipping %s %s extension in unit %d\n",
(nbytes ? "non-empty" : "empty"), xtension, hdu;
}
fits_next_hdu, fh;
}
if (numberof(_oifits_error_stack)) {
h_set, master, errmsg=_oifits_error_stack;
}
return oifits_update(master, errmode=errmode);
}
func oifits_save(master, filename, revn=, overwrite=,
comment=, history=)
/* DOCUMENT oifits_save, master, filename;
Write optical interferometric data contained in instance MASTER into
FILENAME in OI-FITS format. That is to say the OI_TARGET (only one
otherwise an error is produced) and eventual OI_ARRAY, OI_WAVELENGTH,
OI_VIS, OI_VIS2 and OI_T3 data.
Keyword REVN can be used to specify the revision number of the OI-FITS
SEE ALSO: oifits_write_hashtable_as_bintable.
*/
{
local table, value;
/* Assert consistency of MASTER. */
if (! is_hash(master)) error, " expected hash table for first argument";
oifits_update, master, errmode=1, revn=revn;
revn = master.__revn;
/* Create new FITS file with empty primary HDU. */
grow, comment, "FITS (Flexible Image Transport System) format defined in Astronomy and Astrophysics Supplement Series v44/p363, v44/p371, v73/p359, v73/p365", "Contact the NASA Science Office of Standards and Technology for the FITS Definition document #100 and other FITS information.", "Binary Extensions conform to OI-DATA standard for exchange of optical interferometry data currently described at http://www.mrao.cam.ac.uk/~jsy1001/exchange/.", "This file was created by Yeti/Yorick code from CRAL (Centre de Recherche Astrophysique de Lyon).";
fh = fits_create(filename, bitpix=8, overwrite=overwrite, extend=1,
history=history, comment=comment);
fits_write_header, fh;
/* Create a BINTABLE HDU for every OI_FITS datablocks. */
db_list = master.__target;
grow, db_list, master.__array, master.__wavelength, master.__data;
for (i = 1 ; i <= numberof(db_list) ; ++i) {
key = db_list(i);
db = master(key);
class = db.__class;
extname = "OI_" + class;
fits_new_bintable, fh;
fits_set, fh, "EXTNAME", extname;
/* Write header description of the BINTABLE. */
eq_nocopy, table, _oifits_classdef_header(class, revn);
n = numberof(table);
for (j=1 ; j<=n ; ++j) {
member = table(j).member;
if (! is_void(db(member))) {
fits_set, fh, table(j).keyword, db(member), table(j).comment;
}
}
/* Write column description of the BINTABLE. */
eq_nocopy, table, _oifits_classdef_column(class, revn);
n = numberof(table);
ptr = array(pointer, n);
for (j=1 ; j<=n ; ++j) {
nth = swrite(format="%d", j);
member = table(j).member;
eq_nocopy, value, db(member);
ptr(j) = &value;
/* TTYPE# */
fits_set, fh, "TTYPE"+nth, table(j).keyword, table(j).comment;
/* TFORM# */
multiplier = table(j).multiplier;
letter = table(j).letter;
if (multiplier > 0) {
ncells = multiplier;
} else if (is_string(value)) {
ncells = max(strlen(value));
} else {
dims = dimsof(value);
ncells = (dims(1) >= 2 ? dims(3) : 1);
}
fits_set, fh, "TFORM"+nth, swrite(format="%d%s", ncells, letter);
/* TUNIT# */
units = db(member + "_units");
if (! is_string(units) || ! is_scalar(units)) {
if (! is_void(units)) {
write, format="*** WARNING: bad units for '%s'", member;
}
units = table(j).units;
}
if (strlen(units) && units != "-") {
fits_set, fh, "TUNIT"+nth, units;
}
}
fits_write_bintable, fh, ptr;
}
fits_close, fh;
}
/*---------------------------------------------------------------------------*/
/* ACCESSING CONTENTS OF OI-FITS OBJECTS */
func oifits_first(master) { return master(master.__first); }
func oifits_next(master, db)
/* DOCUMENT oifits_first(master)
-or- oifits_next(master, db)
Get first or next datablock in OI-FITS handle MASTER. Useful to run
across all datablocks. For instance:
for (db = oifits_first(master); db; db = oifits_next(master, db)) {
...;
}
SEE ALSO h_new, h_keys. */
{
if (! (is_void(db) || is_void((key = db.__next)))) {
return master(key);
}
}
func oifits_is_data(db) { return db.__is_data; }
/* DOCUMENT oifits_is_data(db)
* Return whether OI-FITS datablock DB contains data (VIS, VIS2 or T3).
* SEE ALSO: oifits_get_type.
*/
local oifits_get, oifits_get_time, oifits_get_mjd, oifits_get_int_time, oifits_get_sta_index, oifits_get_flag, oifits_get_visamp, oifits_get_visamperr, oifits_get_visphi, oifits_get_visphierr, oifits_get_vis2data, oifits_get_vis2err, oifits_get_t3amp, oifits_get_t3amperr, oifits_get_t3phi, oifits_get_t3phierr, oifits_get_ucoord, oifits_get_vcoord, oifits_get_u1coord, oifits_get_v1coord, oifits_get_u2coord, oifits_get_v2coord;
local oifits_get_date_obs, oifits_get_arrname, oifits_get_insname, oifits_get_revn, oifits_get_frame, oifits_get_arrayx, oifits_get_arrayy, oifits_get_arrayz, oifits_get_tel_name, oifits_get_sta_name, oifits_get_sta_index, oifits_get_diameter, oifits_get_staxyz;
local oifits_get_eff_wave, oifits_get_eff_band;
local oifits_get_target_id, oifits_get_target, oifits_get_raep0, oifits_get_decep0, oifits_get_equinox, oifits_get_ra_err, oifits_get_dec_err, oifits_get_sysvel, oifits_get_veltyp, oifits_get_veldef, oifits_get_pmra, oifits_get_pmdec, oifits_get_pmra_err, oifits_get_pmdec_err, oifits_get_parallax, oifits_get_para_err, oifits_get_spectyp;
/* DOCUMENT oifits_get_...(master, db);
This functions query a given attribute of OI-FITS data block DB
in OI-FITS handle MASTER:
oifits_get_date_obs - get UTC start date of observations
oifits_get_time - get UTC time of observation (s)
oifits_get_mjd - get Modified Julian Date
oifits_get_int_time - get integration time (s)
oifits_get_sta_index - get station numbers contributing to the data
oifits_get_flag - get flags
oifits_get_visamp - get visibility amplitude
oifits_get_visamperr - get error in visibility amplitude
oifits_get_visphi - get visibility phase (deg)
oifits_get_visphierr - get error in visibility phase (deg)
oifits_get_vis2data - get squared visibility
oifits_get_vis2err - get error in squared visibility
oifits_get_t3amp - get triple-product amplitude
oifits_get_t3amperr - get error in triple product amplitude
oifits_get_t3phi - get triple-product phase (deg)
oifits_get_t3phierr - get error in triple product phase (deg)
oifits_get_ucoord - get u coordinate of the data (m)
oifits_get_vcoord - get v coordinate of the data (m)
oifits_get_u1coord - get u coordinate of baseline AB of the triangle (m)
oifits_get_v1coord - get v coordinate of baseline AB of the triangle (m)
oifits_get_u2coord - get u coordinate of baseline BC of the triangle (m)
oifits_get_v2coord - get v coordinate of baseline BC of the triangle (m)
Query attributes for OI_ARRAY data block:
oifits_get_arrname - get identifier of corresponding OI_ARRAY
oifits_get_revn - get revision number of the table definition
oifits_get_frame - get coordinate frame
oifits_get_arrayx - get X coordinate of array center (m)
oifits_get_arrayy - get Y coordinate of array center (m)
oifits_get_arrayz - get Z coordinate of array center (m)
oifits_get_tel_name - get telescope name
oifits_get_sta_name - get station name
oifits_get_sta_index - get station number
oifits_get_diameter - get element diameter (m)
oifits_get_staxyz - get station coordinate relative to array center (m)
Query attributes for OI_TARGET data block:
oifits_get_target_id - get index number of target(s)
oifits_get_target - get target names(s)
oifits_get_raep0 - get R.A. at mean equinox (deg)
oifits_get_decep0 - get decl. at mean equinox (deg)
oifits_get_equinox - get equinox
oifits_get_ra_err - get error in R.A. at mean equinox (deg)
oifits_get_dec_err - get error in decl. at mean equinox (deg)
oifits_get_sysvel - get Systemic radial velocity (m/s)
oifits_get_veltyp - get reference for radial velocity (LSR, GEOCENTR, etc.)
oifits_get_veldef - get definition of radial velocity (OPTICAL, RADIO)
oifits_get_pmra - get proper motion in R.A. (deg/yr)
oifits_get_pmdec - get proper motion in decl. (deg/yr)
oifits_get_pmra_err - get error of proper motion in R.A. (deg/yr)
oifits_get_pmdec_err - get error of proper motion in decl. (deg/yr)
oifits_get_parallax - get parallax (deg)
oifits_get_para_err - get error in parallax (deg)
oifits_get_spectyp - get spectral type
Query attributes for OI_WAVELENGTH data block:
oifits_get_insname - get identifier of corresponding OI_WAVELENGTH
oifits_get_eff_wave - get effective wavelength of channel (m)
oifits_get_eff_band - get effective bandpass of channel (m)
SEE ALSO: oifits_new.
*/
func oifits_get_time(master, db) { return db.time; }
func oifits_get_mjd(master, db) { return db.mjd; }
func oifits_get_int_time(master, db) { return db.int_time; }
func oifits_get_sta_index(master, db) { return db.sta_index; }
func oifits_get_flag(master, db) { return db.flag; }
func oifits_get_visamp(master, db) { return db.visamp; }
func oifits_get_visamperr(master, db) { return db.visamperr; }
func oifits_get_visphi(master, db) { return db.visphi; }
func oifits_get_visphierr(master, db) { return db.visphierr; }
func oifits_get_vis2data(master, db) { return db.vis2data; }
func oifits_get_vis2err(master, db) { return db.vis2err; }
func oifits_get_t3amp(master, db) { return db.t3amp; }
func oifits_get_t3amperr(master, db) { return db.t3amperr; }
func oifits_get_t3phi(master, db) { return db.t3phi; }
func oifits_get_t3phierr(master, db) { return db.t3phierr; }
func oifits_get_ucoord(master, db) { return db.ucoord; }
func oifits_get_vcoord(master, db) { return db.vcoord; }
func oifits_get_u1coord(master, db) { return db.u1coord; }
func oifits_get_v1coord(master, db) { return db.v1coord; }
func oifits_get_u2coord(master, db) { return db.u2coord; }
func oifits_get_v2coord(master, db) { return db.v2coord; }
func oifits_get_date_obs(master, db) { return db.date_obs; }
func oifits_get_arrname(master, db) { return db.arrname; }
func oifits_get_insname(master, db) { return db.insname; }
func oifits_get_revn(master, db) { return db.revn; }
func oifits_get_frame(master, db) { return db.frame; }
func oifits_get_arrayx(master, db) { return db.arrayx; }
func oifits_get_arrayy(master, db) { return db.arrayy; }
func oifits_get_arrayz(master, db) { return db.arrayz; }
func oifits_get_tel_name(master, db) { return db.tel_name; }
func oifits_get_sta_name(master, db) { return db.sta_name; }
func oifits_get_sta_index(master, db) { return db.sta_index; }
func oifits_get_diameter(master, db) { return db.diameter; }
func oifits_get_staxyz(master, db) { return db.staxyz; }
func oifits_get_target_id(master, db) { return db.target_id; }
func oifits_get_target(master, db) { return db.target; }
func oifits_get_raep0(master, db) { return db.raep0; }
func oifits_get_decep0(master, db) { return db.decep0; }
func oifits_get_equinox(master, db) { return db.equinox; }
func oifits_get_ra_err(master, db) { return db.ra_err; }
func oifits_get_dec_err(master, db) { return db.dec_err; }
func oifits_get_sysvel(master, db) { return db.sysvel; }
func oifits_get_veltyp(master, db) { return db.veltyp; }
func oifits_get_veldef(master, db) { return db.veldef; }
func oifits_get_pmra(master, db) { return db.pmra; }
func oifits_get_pmdec(master, db) { return db.pmdec; }
func oifits_get_pmra_err(master, db) { return db.pmra_err; }
func oifits_get_pmdec_err(master, db) { return db.pmdec_err; }
func oifits_get_parallax(master, db) { return db.parallax; }
func oifits_get_para_err(master, db) { return db.para_err; }
func oifits_get_spectyp(master, db) { return db.spectyp; }
func oifits_get_eff_wave(master, db)
{
return _oifits_get_link_member(master, db, "__ins", "eff_wave");
}
func oifits_get_eff_band(master, db)
{
return _oifits_get_link_member(master, db, "__ins", "eff_band");
}
func _oifits_get_link_member(master, db, link, key)
{
if (! master.__clean) {
oifits_update, master;
}
return master(db(link))(key);
}
func _oifits_push(master, key, value)
{
h_set, master, key, grow(h_pop(master, key), value);
}
/*---------------------------------------------------------------------------*/
/* ERROR MANAGEMENT */
/* _oifits_datablock_builder calls _oifits_error to format the
error message and which calls _oifits_on_error to manage
the error. The result is returned to _oifits_datablock_builder,
0 means continue (unless it is a fatal error), -1 means return
immediately. In this way it is possible to customize the behaviour
of _oifits_datablock_builder depending on the objectives:
- reading a file mostly for testing: no error is considered as fatal,
all errors are stored into an extern variable
- usual behaviour: immediately report an error.
*/
local _oifits_on_error;
func _oifits_on_error_stop(message)
{
extern _oifits_error_stack;
_oifits_error_stack = message;
return -1;
}
func _oifits_on_error_push(message)
{
extern _oifits_error_stack;
grow, _oifits_error_stack, message;
return 0;
}
func _oifits_on_error_warn(message)
{
write, format="WARNING: %s\n", message;
return 0;
}
func _oifits_on_error_ignore(message)
{
return 0;
}
_oifits_on_error = _oifits_on_error_stop;
func _oifits_error(message, ..)
{
local a1, a2, a3, a4, a5, a6, a7, a8, a9;
if (more_args()) {
eq_nocopy, a1, next_arg();
if (more_args()) {
eq_nocopy, a2, next_arg();
if (more_args()) {
eq_nocopy, a3, next_arg();
if (more_args()) {
eq_nocopy, a4, next_arg();
if (more_args()) {
eq_nocopy, a5, next_arg();
if (more_args()) {
eq_nocopy, a6, next_arg();
if (more_args()) {
eq_nocopy, a7, next_arg();
if (more_args()) {
eq_nocopy, a8, next_arg();
if (more_args()) {
eq_nocopy, a9, next_arg();
if (more_args()) {
error, "too many arguments";
} else {
message = swrite(format=message, a1, a2, a3, a4, a5, a6, a7, a8, a9);
}
} else {
message = swrite(format=message, a1, a2, a3, a4, a5, a6, a7, a8);
}
} else {
message = swrite(format=message, a1, a2, a3, a4, a5, a6, a7);
}
} else {
message = swrite(format=message, a1, a2, a3, a4, a5, a6);
}
} else {
message = swrite(format=message, a1, a2, a3, a4, a5);
}
} else {
message = swrite(format=message, a1, a2, a3, a4);
}
} else {
message = swrite(format=message, a1, a2, a3);
}
} else {
message = swrite(format=message, a1, a2);
}
} else {
message = swrite(format=message, a1);
}
}
++_oifits_error_count;
return _oifits_on_error(message);
}
func oifits_clear_error(master, msg)
{
return h_pop(master, "__errmsg");
}
func oifits_get_error(master, msg)
{
return h_get(master, "__errmsg");
}
/*---------------------------------------------------------------------------*/
/* SIMULATE DATA */
func oifits_add_noise(master, method, level)
/* DOCUMENT oifits_add_noise(master, method, level);
* -or- oifits_add_noise, master, method, level;
* -or- oifits_add_noise(master, method);
* -or- oifits_add_noise, master, method;
*
* Add noise to the measurements in MASTER. The possible methods
* for that are:
*
* METHOD = 1 or "generate" to add noise to noiseless data; the
* standard deviation of the noise is taken from the contents of
* MASTER; in this case, the LEVEL argument must be nil or omitted.
*
* METHOD = 2 or "snr" to add noise to noiseless data; the standard
* deviation of noise is computed to achieve a signal-to-noise
* ratio equal to the value of LEVEL.
*
* METHOD = 3 or "amplify" to add noise to noisy data so that the
* standard deviation of total noise (existing one plus added one)
* is multiplied by the value of LEVEL which must be greater or
* equal one. The standard deviation of the noise prior to the
* amplification is taken from the contents of MASTER.
*
* SEE ALSO: oifits_random_normal.
*/
{
/* Setup noisification method. */
if (method == 1 || method == "generate") {
/* Noiseless data: add noise with given standard deviation. */
if (! is_void(level)) {
error, "expected nil argument";
}
method = 1;
} else if (method == 2 || method == "snr") {
/* Noiseless data: add noise to achieve given SNR. */
if (min(level) <= 0.0) {
error, "signal to noise ratio must be strictly greater than zero";
}
method = 2;
} else if (method == 3 || method == "amplify") {
/* Noisy data: amplify noise. */
if (min(level) < 1.0) {
error, "noise amplification factor must be greater or equal one";
}
method = 3;
} else {
error, "bad value for noisification method";
}
/* Setup random generator. */
randgen = oifits_random_normal;
/* Avoid side effects. */
if (! am_subroutine()) master = oifits_clone(master, 1n);
/* Add noise to all data blocks. */
for (db = oifits_first(master); db ; db = oifits_next(master, db)) {
type = oifits_get_type(db);
if (type == OIFITS_TYPE_VIS) {
local visamp; eq_nocopy, visamp, db.visamp;
local visamperr; eq_nocopy, visamperr, db.visamperr;
local visphi; eq_nocopy, visphi, db.visphi;
local visphierr; eq_nocopy, visphierr, db.visphierr;
if (method == 1) {
/* Noiseless data: add noise with given standard deviation. */
h_set, db,
visamp = randgen(visamp, visamperr),
visphi = randgen(visphi, visphierr);
} else if (method == 2) {
/* Noiseless data: add noise to achieve given SNR. */
visamperr = (1.0/level(1))*visamp;
visphierr = array((1.0/level(0)), dimsof(visphi));
h_set, db,
visamp = randgen(visamp, visamperr), visamperr = visamperr,
visphi = randgen(visphi, visphierr), visphierr = visphierr;
} else if (method == 3) {
/* Noisy data: amplify noise. */
h_set, db,
visamp = randgen(visamp, sqrt(level(1)^2 - 1.0)*visamperr),
visamperr = level(1)*visamperr,
visphi = randgen(visphi, sqrt(level(0)^2 - 1.0)*visphierr),
visphierr = level(0)*visphierr;
}
} else if (type == OIFITS_TYPE_VIS2) {
local vis2data; eq_nocopy, vis2data, db.vis2data;
local vis2err; eq_nocopy, vis2err, db.vis2err;
if (method == 1) {
/* Noiseless data: add noise with given standard deviation. */
h_set, db, vis2data = randgen(vis2data, vis2err);
} else if (method == 2) {
/* Noiseless data: add noise to achieve given SNR. */
vis2err = (1.0/level(1))*vis2data;
h_set, db, vis2data = randgen(vis2data, vis2err), vis2err = vis2err;
} else if (method == 3) {
/* Noisy data: amplify noise. */
h_set, db,
vis2data = randgen(vis2data, sqrt(level(1)^2 - 1.0)*vis2err),
vis2err = level(1)*vis2err;
}
} else if (type == OIFITS_TYPE_T3) {
local t3amp; eq_nocopy, t3amp, db.t3amp;
local t3amperr; eq_nocopy, t3amperr, db.t3amperr;
local t3phi; eq_nocopy, t3phi, db.t3phi;
local t3phierr; eq_nocopy, t3phierr, db.t3phierr;
if (method == 1) {
/* Noiseless data: add noise with given standard deviation. */
h_set, db,
t3amp = randgen(t3amp, t3amperr),
t3phi = randgen(t3phi, t3phierr);
} else if (method == 2) {
/* Noiseless data: add noise to achieve given SNR. */
t3amperr = (1.0/level(1))*t3amp;
t3phierr = array((1.0/level(0)), dimsof(t3phi));
h_set, db,
t3amp = randgen(t3amp, t3amperr), t3amperr = t3amperr,
t3phi = randgen(t3phi, t3phierr), t3phierr = t3phierr;
} else if (method == 3) {
/* Noisy data: amplify noise. */
h_set, db,
t3amp = randgen(t3amp, sqrt(level(1)^2 - 1.0)*t3amperr),
t3amperr = level(1)*t3amperr,
t3phi = randgen(t3phi, sqrt(level(0)^2 - 1.0)*t3phierr),
t3phierr = level(0)*t3phierr;
}
}
}
return master;
}
func oifits_random_normal(a, b)
/* DOCUMENT oifits_random_normal(stdev)
* -or- oifits_random_normal(mean, stdev)
* Return an array of pseudo random values folling Gaussian distribution
* centerd at MEAN (assumed to be zero in the first case) and standard
* deviation given by STDEV.
*
* SEE ALSO: random_n.
*/
{
if (is_void(b)) {
return random_n(dimsof(a))*a;
} else {
return a + random_n(dimsof(a, b))*b;
}
}
/*---------------------------------------------------------------------------*/
/* UTILITIES */
func oifits_fix_name(s)
/* DOCUMENT oifits_fix_name(str)
Return (array of) string(s) STR converted into uppercase letters
and with trailing spaces stripped.
SEE ALSO: strtrim, strcase, strupper. */
{
s = strcase(1, strtrim(s, 2));
if (is_array((j = where(s == string())))) s(j) = ""; // fix nil strings
return s;
}
//func oifits_fix_name_alt(s) {
// return strupper(strtrim(s, 2)); }
//if (is_func(strcase) != 2) {
// oifits_fix_name = oifits_fix_name_alt; // overwrite with alternative function
//}
//oifits_fix_name_alt = []; // destroy the alternative function
func oifits_clone(obj, copy_array)
/* DOCUMENT oifits_clone(obj)
-or- oifits_clone(obj, 0/1)
Returns a clone of object OBJ. If second argument is true, array
members found in OBJ are duplicated in its clone; otherwise, such
members just get referenced in the clone. The cloning is recursive.
SEE ALSO: h_new, _lst. */
{
if (is_array(obj)) {
if (is_pointer(obj)) {
write, "FIXME: shall do something special with array of pointers";
}
if (copy_array) {
copy = obj;
return copy;
}
return obj;
}
if (is_hash(obj)) {
clone = h_new();
for (key = h_first(obj); key; key = h_next(obj, key)) {
h_set, clone, key, oifits_clone(obj(key), copy_array);
}
return clone;
}
if (is_list(obj)) {
write, "FIXME: shall do something special with lists";
}
return obj;
}
/*---------------------------------------------------------------------------*/
/* PARSING OF ARGUMENTS */
local _oifits_get_integer_scalar, _oifits_get_integer_vector;
local _oifits_get_integer_array, _oifits_get_real_scalar;
local _oifits_get_real_vector, _oifits_get_real_array;
local _oifits_get_string_scalar, _oifits_get_string_vector;
local _oifits_get_string_array;
/* DOCUMENT _oifits_get_integer_scalar(arg, def)
* -or- _oifits_get_integer_vector(arg, def)
* -or- _oifits_get_integer_array(arg, def)
* -or- _oifits_get_real_scalar(arg, def)
* -or- _oifits_get_real_vector(arg, def)
* -or- _oifits_get_real_array(arg, def)
* -or- _oifits_get_string_scalar(arg, def)
* -or- _oifits_get_string_vector(arg, def)
* -or- _oifits_get_string_array(arg, def)
*
* These functions make ARG into a scalar, a vector or an array of given
* type (long for integer and double for real). If ARG is nil, its value
* is given by DEF. Conversion, if required, is done in-place (only
* works if ARG is a symbol not an expression). These functions return
* 0 upon success; -1 otherwise.
*
* SEE ALSO: is_array, is_scalar, is_vector, structof, oi_check_arg.
*/
func _oifits_get_string_scalar(&arg, def)
{
if (is_void(arg)) arg = def;
return (is_scalar(arg) && is_string(arg) ? 0 : -1);
}
func _oifits_get_string_vector(&arg, def)
{
if (is_void(arg)) arg = def;
return (is_vector(arg) && is_string(arg) ? 0 : -1);
}
func _oifits_get_string_array(&arg, def)
{
if (is_void(arg)) arg = def;
return (is_string(arg) ? 0 : -1);
}
func _oifits_get_integer_scalar(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_scalar(arg)) {
if ((s = structof(arg)) == long) return 0;
if (s == int || s == short || s == char) {
arg = long(arg);
return 0;
}
}
return -1;
}
func _oifits_get_integer_vector(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_vector(arg)) {
if ((s = structof(arg)) == long) return 0;
if (s == int || s == short || s == char) {
arg = long(arg);
return 0;
}
}
return -1;
}
func _oifits_get_integer_array(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_array(arg)) {
if ((s = structof(arg)) == long) return 0;
if (s == int || s == short || s == char) {
arg = long(arg);
return 0;
}
}
return -1;
}
func _oifits_get_real_scalar(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_scalar(arg)) {
if ((s = structof(arg)) == double) return 0;
if (s == float || s == long || s == int || s == short || s == char) {
arg = double(arg);
return 0;
}
}
return -1;
}
func _oifits_get_real_vector(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_vector(arg)) {
if ((s = structof(arg)) == double) return 0;
if (s == float || s == long || s == int || s == short || s == char) {
arg = double(arg);
return 0;
}
}
return -1;
}
func _oifits_get_real_array(&arg, def)
{
if (is_void(arg)) arg = def;
if (is_array(arg)) {
if ((s = structof(arg)) == double) return 0;
if (s == float || s == long || s == int || s == short || s == char) {
arg = double(arg);
return 0;
}
}
return -1;
}
func _oifits_copy_member(dst, src, key)
/**DOCUMENT _oifits_copy_member, dst, src, key;
*
* Copy value of member KEY from hash-table SRC into hash-table DST.
*
* SEE ALSO: h_get, h_set.
*/
{
value = h_get(src, key); /* force a copy for array members */
h_set, dst, key, value;
}
/*---------------------------------------------------------------------------*/
/* OI-FITS FORMAT DESCRIPTION TABLES
*
* The format of the OI-FITS data block is described in what follows by
* strings like:
*
* PART MEMBER KEYWORD FORMAT UNITS COMMENT
*
* where:
*
* PART = 'H' for header card, 'T' for table column
* MEMBER = name of member if hash table / structure
* KEYWORD = keyword for HDU header or column name for table (TTYPE)
* FORMAT = nL where n is an integer and L a letter
* for the HDU header: 0 means optional and 1 means required
* for the table: a negative number means abs(n)*NWAVE
* UNITS = default units
* COMMENT = description
*/
/*-------------------------------------------*/
/* OI_TARGET CLASS DEFINITION (1ST REVISION) */
/*-------------------------------------------*/
_OIFITS_CLASSDEF_TARGET_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"T target_id TARGET_ID 1I - index number",
"T target TARGET 16A - target name",
"T raep0 RAEP0 1D deg RA at mean equinox",
"T decep0 DECEP0 1D deg DEC at mean equinox",
"T equinox EQUINOX 1E yr equinox",
"T ra_err RA_ERR 1D deg error in RA at mean equinox",
"T dec_err DEC_ERR 1D deg error in DEC at mean equino",
"T sysvel SYSVEL 1D m/s systemic radial velocity",
"T veltyp VELTYP 8A - reference for radial velocity",
"T veldef VELDEF 8A - definition of radial velocity",
"T pmra PMRA 1D deg/yr proper motion in RA",
"T pmdec PMDEC 1D deg/yr proper motion in DEC",
"T pmra_err PMRA_ERR 1D deg/yr error of proper motion in RA",
"T pmdec_err PMDEC_ERR 1D deg/yr error of proper motion in DEC",
"T parallax PARALLAX 1E deg parallax",
"T para_err PARA_ERR 1E deg error in parallax",
"T spectyp SPECTYP 16A - spectral type"];
/*------------------------------------------*/
/* OI_ARRAY CLASS DEFINITION (1ST REVISION) */
/*------------------------------------------*/
_OIFITS_CLASSDEF_ARRAY_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"H arrname ARRNAME 1A - array name for cross-referencing",
"H frame FRAME 1A - coordinate frame",
"H arrayx ARRAYX 1D m array center X-coordinate",
"H arrayy ARRAYY 1D m array center Y-coordinate",
"H arrayz ARRAYZ 1D m array center Z-coordinate",
"T tel_name TEL_NAME 16A - telescope name",
"T sta_name STA_NAME 16A - station name",
"T sta_index STA_INDEX 1I - station index",
"T diameter DIAMETER 1E m element diameter",
"T staxyz STAXYZ 3D m station coordinates relative to array center"];
/*-----------------------------------------------*/
/* OI_WAVELENGTH CLASS DEFINITION (1ST REVISION) */
/*-----------------------------------------------*/
_OIFITS_CLASSDEF_WAVELENGTH_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"H insname INSNAME 1A - name of detector for cross-referencing",
"T eff_wave EFF_WAVE 1E m effective wavelength of channel",
"T eff_band EFF_BAND 1E m effective bandpass of channel"];
/*----------------------------------------*/
/* OI_VIS CLASS DEFINITION (1ST REVISION) */
/*----------------------------------------*/
_OIFITS_CLASSDEF_VIS_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"H date_obs DATE-OBS 1A - UTC start date of observations",
"H arrname ARRNAME 0A - name of corresponding array",
"H insname INSNAME 1A - name of correspondingdetector",
"T target_id TARGET_ID 1I - target number as index into OI_TARGET table",
"T time TIME 1D s UTC time of observation",
"T mjd MJD 1D day modified Julian Day",
"T int_time INT_TIME 1D s integration time",
"T visamp VISAMP -1D - visibility amplitude",
"T visamperr VISAMPERR -1D - error in visibility amplitude",
"T visphi VISPHI -1D deg visibility phase",
"T visphierr VISPHIERR -1D deg error in visibility phase",
"T ucoord UCOORD 1D m U coordinate of the data",
"T vcoord VCOORD 1D m V coordinate of the data",
"T sta_index STA_INDEX 2I - station numbers contributing to the data",
"T flag FLAG -1L - flag"];
/*-----------------------------------------*/
/* OI_VIS2 CLASS DEFINITION (1ST REVISION) */
/*-----------------------------------------*/
_OIFITS_CLASSDEF_VIS2_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"H date_obs DATE-OBS 1A - UTC start date of observations",
"H arrname ARRNAME 0A - name of corresponding array",
"H insname INSNAME 1A - name of correspondingdetector",
"T target_id TARGET_ID 1I - target number as index into OI_TARGET table",
"T time TIME 1D s UTC time of observation",
"T mjd MJD 1D day modified Julian Day",
"T int_time INT_TIME 1D s integration time",
"T vis2data VIS2DATA -1D - squared visibility",
"T vis2err VIS2ERR -1D - error in squared visibility",
"T ucoord UCOORD 1D m U coordinate of the data",
"T vcoord VCOORD 1D m V coordinate of the data",
"T sta_index STA_INDEX 2I - station numbers contributing to the data",
"T flag FLAG -1L - flag"];
/*---------------------------------------*/
/* OI_T3 CLASS DEFINITION (1ST REVISION) */
/*---------------------------------------*/
_OIFITS_CLASSDEF_T3_1 = \
["H revn OI_REVN 1I - revision number of the table definition",
"H date_obs DATE-OBS 1A - UTC start date of observations",
"H arrname ARRNAME 0A - name of corresponding array",
"H insname INSNAME 1A - name of correspondingdetector",
"T target_id TARGET_ID 1I - target number as index into OI_TARGET table",
"T time TIME 1D s UTC time of observation",
"T mjd MJD 1D day modified Julian Day",
"T int_time INT_TIME 1D s integration time",
"T t3amp T3AMP -1D - triple product amplitude",
"T t3amperr T3AMPERR -1D - error in triple product amplitude",
"T t3phi T3PHI -1D deg triple product phase",
"T t3phierr T3PHIERR -1D deg error in triple product phase",
"T u1coord U1COORD 1D m U coordinate of baseline AB of the triangle",
"T v1coord V1COORD 1D m V coordinate of baseline AB of the triangle",
"T u2coord U2COORD 1D m U coordinate of baseline BC of the triangle",
"T v2coord V2COORD 1D m V coordinate of baseline BC of the triangle",
"T sta_index STA_INDEX 3I - station numbers contributing to the data",
"T flag FLAG -1L - flag"];
/*---------------------------------------------------------------------------*/
/* INITIALIZATION OF OI-FITS TABLES AND CONSTANTS */
/* Some constants. */
local OIFITS_PI, OIFITS_MICRON;
local OIFITS_DEGREE, OIFITS_ARCSECOND, OIFITS_MILLIARCSECOND;
/* DOCUMENT OIFITS_PI = 3.1415.....
* -or- OIFITS_MICRON = micron to meter conversion factor
* -or- OIFITS_DEGREE = degree to radian conversion factor
* -or- OIFITS_ARCSECOND = arcsecond to radian conversion factor
* -or- OIFITS_MILLIARCSECOND = milliarcsecond to radian conversion factor
*
* SEE ALSO: oifits_get_type.
*/
OIFITS_PI = 3.141592653589793238462643383279503;
OIFITS_DEGREE = OIFITS_PI/180;
OIFITS_ARCSECOND = OIFITS_DEGREE/3600;
OIFITS_MILLIARCSECOND = 1e-3*OIFITS_ARCSECOND;
OIFITS_MICRON = 1e-6;
local OIFITS_TYPE_TARGET, OIFITS_TYPE_WAVELENGTH, OIFITS_TYPE_ARRAY;
local OIFITS_TYPE_VIS, OIFITS_TYPE_VIS2, OIFITS_TYPE_T3;
func oifits_get_type(db) { return db.__type; }
/* DOCUMENT oifits_get_type(db)
Returns OI-FITS type identifier for datablock DB, one of:
OIFITS_TYPE_TARGET - for an OI-FITS data block with the list
of targets;
OIFITS_TYPE_WAVELENGTH - for an instrumental OI-FITS data block;
OIFITS_TYPE_ARRAY - for an OI-FITS data block describing the
array of telescopes;
OIFITS_TYPE_VIS - for an OI-FITS data block with measured
complex visibilities;
OIFITS_TYPE_VIS2 - for an OI-FITS data block with measured
squared visibilities;
OIFITS_TYPE_T3 - for an OI-FITS data block with measured
triple products (bispectrum).
SEE ALSO: oifits_new. */
struct _oifits_classdef {
string member, keyword, letter, units, comment;
long multiplier, ctype;
};
local _oifits_classdef;
local _OIFITS_CLASSDEF_FORMAT;
local _OIFITS_CTYPE_LOGICAL, _OIFITS_CTYPE_INTEGER;
local _OIFITS_CTYPE_REAL, _OIFITS_CTYPE_STRING;
func _oifits_classdef_name(class, revn)
{
if (is_integer(class)) class = _OIFITS_CLASS_NAME_TABLE(class);
return swrite(format=_OIFITS_CLASSDEF_FORMAT, class, revn);
}
func _oifits_classdef_header(class, revn)
{ return *symbol_def(_oifits_classdef_name(class, revn))(1); }
func _oifits_classdef_column(class, revn)
{ return *symbol_def(_oifits_classdef_name(class, revn))(2); }
/* DOCUMENT _oifits_classdef_name(class, revn)
-or- _oifits_classdef_column(class, revn)
-or- _oifits_classdef_header(class, revn)
_oifits_classdef_name returns the name of the global variable where
is stored the class definition for CLASS datablock for revision number
REVN of the OIFITS format.
_oifits_classdef_column / _oifits_classdef_header return definition
table for columns / header keywords of CLASS datablock for revision
number REVN of the OIFITS format.
SEE ALSO: */
_OIFITS_CLASSDEF_FORMAT = "_OIFITS_CLASSDEF_%s_%d";
_OIFITS_CTYPE_LOGICAL = 1; /* for format letter 'L' */
_OIFITS_CTYPE_INTEGER = 2; /* for format letters 'I' or 'J' */
_OIFITS_CTYPE_REAL = 3; /* for format letters 'D' or 'E' */
_OIFITS_CTYPE_STRING = 4; /* for format letter 'A' */
local _OIFITS_REVN_MAX;
local _OIFITS_REVN_DEFAULT;
/* DOCUMENT _OIFITS_REVN_MAX maximum OI-FITS revision number
_OIFITS_REVN_DEFAULT default OI-FITS revision number
SEE ALSO: */
_OIFITS_REVN_MAX = 1;
_OIFITS_REVN_DEFAULT = 1;
/* Hash table for fast identification of OI-FITS data blocks. */
local _OIFITS_DATABLOCK_CLASS;
local _OIFITS_TYPE_TABLE, _OIFITS_CLASS_NAME_TABLE;
func _oifits_init
{
extern OIFITS_TYPE_TARGET, OIFITS_TYPE_WAVELENGTH, OIFITS_TYPE_ARRAY;
extern OIFITS_TYPE_VIS, OIFITS_TYPE_VIS2, OIFITS_TYPE_T3;
extern _OIFITS_TYPE_TABLE, _OIFITS_CLASS_NAME_TABLE;
extern _OIFITS_DATABLOCK_CLASS;
_OIFITS_DATABLOCK_CLASS = ["TARGET", "WAVELENGTH", "ARRAY",
"VIS", "VIS2", "T3"];
_OIFITS_TYPE_TABLE = h_new();
_OIFITS_CLASS_NAME_TABLE = array(string, numberof(_OIFITS_DATABLOCK_CLASS));
for (type=numberof(_OIFITS_DATABLOCK_CLASS) ; type>=1 ; --type) {
class = _OIFITS_DATABLOCK_CLASS(type);
h_set, _OIFITS_TYPE_TABLE, "OI_"+class, type;
_OIFITS_CLASS_NAME_TABLE(type) = class;
symbol_set, "OIFITS_TYPE_"+class, type;
}
/* Parse class definition tables. */
local table;
part2code = h_new(h=1, H=1, t=2, T=2); /* fast decoder for PART letter */
letter2code = h_new(l=_OIFITS_CTYPE_LOGICAL,
L=_OIFITS_CTYPE_LOGICAL,
i=_OIFITS_CTYPE_INTEGER,
I=_OIFITS_CTYPE_INTEGER,
j=_OIFITS_CTYPE_INTEGER,
J=_OIFITS_CTYPE_INTEGER,
e=_OIFITS_CTYPE_REAL,
E=_OIFITS_CTYPE_REAL,
d=_OIFITS_CTYPE_REAL,
D=_OIFITS_CTYPE_REAL,
a=_OIFITS_CTYPE_STRING,
A=_OIFITS_CTYPE_STRING); /* fast decoder for
CTYPE letter */
format = "%s %s %s %d%s %s %[^\n]"; /* to decode a single definition line */
part = string();
member = string();
keyword = string();
letter = string();
multiplier = long();
units = string();
comment = string();
for (revn = 1; revn <= _OIFITS_REVN_MAX; ++revn) {
for (type = numberof(_OIFITS_DATABLOCK_CLASS); type >= 1; --type) {
class = _OIFITS_DATABLOCK_CLASS(type);
tablename = _oifits_classdef_name(class, revn);
eq_nocopy, table, symbol_def(tablename);
if (is_void(table)) continue;
number = numberof(table);
cdef = array(_oifits_classdef, number);
code = array(long, number);
mdef = h_new(); /* to check for multiple definitions of members */
kdef = h_new(); /* to check for multiple definitions of keywords */
for (j = 1; j <= number; ++j) {
/* Parse header description table. */
if (sread(table(j), format=format, part, member, keyword, multiplier,
letter, units, comment) < 5
|| is_void((k = part2code(part)))
|| is_void((ctype = letter2code(letter)))
|| strlen(letter) != 1) {
error, swrite(format="syntax error in line %d of table %s",
j, tablename);
}
if (strpart(member, -5:0) == "_units") {
error, swrite(format="illegal member name '%s' at line %d of table %s",
member, j, tablename);
}
if (h_has(mdef, member)) {
error, swrite(format="multiple definitions of member '%s' at line %d of table %s",
member, j, tablename);
} else {
h_set, mdef, member, 1;
}
if (h_has(kdef, keyword)) {
error, swrite(format="multiple definitions of keyword '%s' at line %d of table %s",
keyword, j, tablename);
} else {
h_set, kdef, keyword, 1;
}
if (j == 1 && ((part != "H" && part != "h")
|| member != "revn"
|| keyword != "OI_REVN"
|| multiplier != 1
|| (letter != "I" && letter != "i")
|| units != "-")) {
error, swrite(format="bad first line in table %s (OI_REVN)",
j, tablename);
}
if ((k == 1 /* header */ && (multiplier < 0 || multiplier > 1)) ||
(k == 2 /* column */ && multiplier == 0)) {
error, swrite(format="illegal multiplier line %d of table %s",
j, tablename);
}
code(j) = k;
cdef(j).member = member;
cdef(j).keyword = keyword;
cdef(j).multiplier = multiplier;
cdef(j).letter = letter;
cdef(j).units = units;
cdef(j).comment = comment;
cdef(j).ctype = ctype;
}
symbol_set, tablename, [&cdef(where(code == 1)),
&cdef(where(code == 2))];
}
}
}
_oifits_init; /* must be last statement */
_oifits_init = []; /* avoids calling it again */
/*---------------------------------------------------------------------------*
* Local Variables: *
* mode: Yorick *
* tab-width: 8 *
* c-basic-offset: 2 *
* fill-column: 78 *
* coding: latin-1 *
* End: *
*---------------------------------------------------------------------------*/
|