Package: openstructure / 2.11.1-1

Metadata

Package Version Patches format
openstructure 2.11.1-1 3.0 (quilt)

Patch series

view the series file
Patch File delta Description
python dist packages.patch | (download)

CMakeLists.txt | 2 1 + 1 - 0 !
cmake_support/CopyDependencies.cmake | 2 1 + 1 - 0 !
deployment/macos/deps.py | 14 7 + 7 - 0 !
deployment/macos/pack.py | 8 4 + 4 - 0 !
deployment/win/create_archive.bat.in | 2 1 + 1 - 0 !
doc/conf/conf.py | 2 1 + 1 - 0 !
modules/gui/src/gosty.cc | 2 1 + 1 - 0 !
scripts/dng.bat.in | 2 1 + 1 - 0 !
scripts/ost-nightly-build.sh | 4 2 + 2 - 0 !
scripts/ost_startup.py.in | 2 1 + 1 - 0 !
10 files changed, 20 insertions(+), 20 deletions(-)

 on debian python packages are stored in 'dist-packages', not
 'site-packages'.
fix quotes in ENV.patch | (download)

cmake_support/OST.cmake | 4 2 + 2 - 0 !
1 file changed, 2 insertions(+), 2 deletions(-)

 cmake puts all strings having, for example, '~' in quotes, what
 breaks execution in Bash.
skip network tests.patch | (download)

modules/io/tests/test_io_mmcif.py | 1 1 + 0 - 0 !
modules/io/tests/test_io_pdb.py | 1 1 + 0 - 0 !
2 files changed, 2 insertions(+)

 skip tests requiring network access.
add python3 shebangs.patch | (download)

actions/ost-compare-ligand-structures | 1 1 + 0 - 0 !
actions/ost-compare-structures | 1 1 + 0 - 0 !
actions/ost-compare-structures-legacy | 1 1 + 0 - 0 !
3 files changed, 3 insertions(+)

 adding missing python shebangs.
ost_config.patch | (download)

scripts/dng.in | 4 2 + 2 - 0 !
scripts/ost.in | 4 2 + 2 - 0 !
2 files changed, 4 insertions(+), 4 deletions(-)

 adjusting paths for debian installation.
skip dssp tests.patch | (download)

modules/mol/alg/tests/test_accessibility.py | 1 1 + 0 - 0 !
modules/mol/alg/tests/test_sec_struct.py | 1 1 + 0 - 0 !
2 files changed, 2 insertions(+)

 openstructure is now incompatible with dssp >= 4, thus the
 tests fail if dssp is installed. This patch ignores the failing tests
 until the upstream adapts the code, or removes it altogether.
increase tolerance test_io_sequence_profile.patch | (download)

modules/io/tests/test_io_sequence_profile.cc | 2 1 + 1 - 0 !
1 file changed, 1 insertion(+), 1 deletion(-)

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skip test_io_img.patch | (download)

modules/io/tests/test_io_img.cc | 8 4 + 4 - 0 !
1 file changed, 4 insertions(+), 4 deletions(-)

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