File: genes.hlp

package info (click to toggle)
arb 6.0.2-1%2Bdeb8u1
  • links: PTS, VCS
  • area: non-free
  • in suites: jessie
  • size: 65,916 kB
  • ctags: 53,258
  • sloc: ansic: 394,903; cpp: 250,252; makefile: 19,620; sh: 15,878; perl: 10,461; fortran: 6,019; ruby: 683; xml: 503; python: 53; awk: 32
file content (37 lines) | stat: -rw-r--r-- 1,248 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
#Please insert up references in the next lines (line starts with keyword UP)
UP	arb.hlp
UP	glossary.hlp
UP	species.hlp

#Please insert subtopic references  (line starts with keyword SUB)
SUB	mark_genes.hlp
SUB	selected_gene.hlp
SUB	gene_species.hlp
# SUB	gene_info.hlp
SUB	organisms.hlp

# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}

#************* Title of helpfile !! and start of real helpfile ********
TITLE		What are Genes ?

DESCRIPTION	One gene is one database entry containing subentries which
                describe the gene. Every gene belongs to a specific
		organism, but one organism may have many genes.

                Main (reserved) entries of a gene:

                     name, pos_begin, pos_end, complement,
                     pos_joined, pos_begin1, pos_end1, pos_begin2, pos_end2, ...
                     pos_uncertain,
                     codon_start, transl_table

                See LINK{gene_info.hlp} for details about these fields.

NOTE		The main-sequence of a organism(species) is stored in the
		alignment 'ali_genom'. You should not change this alignment.
                
WARNINGS	The alignment 'ali_genom' should NOT contain any gaps!!!!

BUGS		No known bugs