1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
|
#Please insert up references in the next lines (line starts with keyword UP)
UP arb.hlp
UP glossary.hlp
UP pa_add_sel.hlp
#Please insert subtopic references (line starts with keyword SUB)
#SUB subtopic.hlp
# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
#************* Title of helpfile !! and start of real helpfile ********
TITLE Add Marked Species and Local Optimization
OCCURRENCE ARB_NT/Tree/Parsimony/Tree/Add Marked Species + NNI
DESCRIPTION All 'marked species' (see LINK{glossary.hlp}) are
positioned according to maximum parsimony criteria. Local
optimization of the current tree is performed by swapping
subtrees which are separated by not more than one edge.
NOTES The current parsimony value (number of base changes needed) is
displayed after the 'Current Par' prompt in the upper part of
the 'ARB_PARSIMONY' window and the 'Message' window (pops up
while calculating).
EXAMPLES None
WARNINGS No global optimization is performed
BUGS No bugs known
|
