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#Please insert up references in the next lines (line starts with keyword UP)
UP arb.hlp
UP glossary.hlp
UP pt_server.hlp
#Please insert subtopic references (line starts with keyword SUB)
#SUB subtopic.hlp
# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
#************* Title of helpfile !! and start of real helpfile ********
TITLE PT_SERVER Administration
OCCURRENCE ARB_NT/ETC/PT Admin
DESCRIPTION Allows you to start/kill and build/update 'PT_SERVER'
databases.
Select a 'PT_SERVER' and database from the menu displayed after
pressing the button below the 'PT_SERVER' prompt.
Start or kill the selected 'PT_SERVER' by pressing the
corresponding buttons.
Press the 'BUILD SERVER' button to export the current database
to the selected 'PT_SERVER' database.
In Genome Databases you may check the 'Gene server' toggle to
build a PT-Server which is based on the sequences of the single
genes (and intergene regions) of all organisms.
Such a PT-Server allows to perform similarity searches and probe
design/match for single genes (in opposite to whole genomes with
a "normal" PT-Server).
When designing probes with such a gene PT-Server you always have
to validate these probes against a PT-Server build upon complete
genome sequences, otherwise you will get incorrect results for all
probes matching at beginning/end of a gene.
NOTES Read PT_SERVER: What Why and How if you do not understand this
helptext.
The probe designing and matching tools ('ARB_PROBE') and the
aligner of the editor ('ARB_EDIT4') rely on 'PT_SERVER'
databases and servers.
Update (re-build) the 'PT_SERVER' database when new
sequence (species) entries or sequence modifications (base
changes) have been introduced into the current database.
EXAMPLES None
WARNINGS None
BUGS No bugs known
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