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#Please insert up references in the next lines (line starts with keyword UP)
UP arb.hlp
UP glossary.hlp
UP sp_info.hlp
#Please insert subtopic references (line starts with keyword SUB)
#SUB subtopic.hlp
# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
#************* Title of helpfile !! and start of real helpfile ********
TITLE Node Display Setup (NDS)
OCCURRENCE ARB_NT/Tree/NDS
ARB_GENE_MAP/Properties/NDS
NOTES Read this text carefully. You won't need this function, but
it offers many many new possibilities.
DESCRIPTION Extracts data from the database entries of every species and
builds a user-readable string from that data.
This string can be used in many different functions, especially
to show the species information at the tips of the tree or
to show gene information at the tips of the genes in the
gene map.
It allows you to show part of the sequences, the full_name,
the accession numbers right in the tree. You may even
generate tables with all kinds of useful information, like
probe match results for a set of oligo probes.
Choose the 'NDS' item from the 'ARB_NT/Tree' menu to
display the 'NDS' window.
Enable field extraction:
Press the 'LEAF' and/or 'GRP.' checkbox to activate the display of
the corresponding 'field' entry at leafs and/or groups
of the tree shown in the tree display area of the 'ARB_NT' window.
Select 'FIELD':
The order of the data shown at the tree nodes
(from left to right) corresponds to that in the 'NDS'
window (top to bottom). To select a 'field' enter the field name
by hand or press the respective <S> button and select it
from the popup-list.
Press <RESCAN> there to display all fields, if fields have been deleted
from the list by 'Species Information/Delete hide fields'.
Define number of characters:
Type the number of characters (including blanks) to be
displayed to the 'WIDTH' subwindow.
Display SRT/ACI:
The 'Search and replace Tool (SRT)' and the 'ARB Command
Interpreter (ACI)' in combination with 'Nodes Display
Setup (NDS)' allows information to be extracted and/or modified
from the 'Field' entries, before being displayed at the tree nodes.
Press the corresponding <SRT> button to display the
'SRT_ACI_SELECT' window and select a predefined procedure
(see LINK{acisrt.hlp}).
The corresponding syntax (see LINK{srt.hlp}, LINK{aci.hlp} and
LINK{reg.hlp}) is displayed in the 'ACI SRT PROGRAM' subwindow.
The displayed strings can be modified by typing to the subwindows.
NOTES Strings generated using 'SRT' or 'ACI' and displayed at the
nodes are not stored in the database. You can use
the 'Modify fields of listed species'-menuentry in the
'Search & Query' window to do this.
The width of the output is limited to 4000 characters.
EXAMPLES None
WARNINGS None
BUGS None
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