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#Please insert up references in the next lines (line starts with keyword UP)
UP arb.hlp
UP glossary.hlp
UP rna3d_manual.pdf
#Please insert subtopic references (line starts with keyword SUB)
#SUB subtopic.hlp
SUB rna3d_dispMolecule.hlp
SUB rna3d_dispBases.hlp
SUB rna3d_dispHelices.hlp
SUB rna3d_mapSeqData.hlp
# Hypertext links in helptext can be added like this: LINK{ref.hlp|http://add|bla@domain}
#************* Title of helpfile !! and start of real helpfile ********
TITLE Visualization of Three-dimensional structure of small subunit (16S) rRNA
OCCURRENCE In Primary Sequence Editor (ARB_EDIT4)
DESCRIPTION
This program (RNA3D) displays the three-dimensional structure of small subunit (16S)
rRNA in OpenGL 3D environment. The annotation of RNA three-dimensional structures
consists of a preprocessing of the information embedded in their 3D coordinates. It
processes PDB structural information stored in the PDB file (1M5G) and used for
further structural analysis and searches. To provide user with the more detailed
perspective of 16S rRNA structure, structural information corresponding to the
ribosomal proteins were excluded during processing. The extracted structural information
is then fed to OpenGL engine, where it is further transformed into a hierarchy of
OpenGL objects, which encode molecule chains, residues and base positions. At this
stage, further processing may occur, for example when the user requests the mapping of
secondary structure information of rRNA onto the molecule in the form of loops and
stems. Any information derived from the multiple alignments (phylogenetic information)
is merged into the structural information or rRNA molecule in the post-processing
step.
NOTES
More information regarding merging secondary structure information and mapping
individual rRNA sequence,sequence associated data, oligo-nucleotide probes can be found
in the respective help files. See "Subtopics" section.
EXAMPLES None
WARNINGS None
BUGS No bugs known
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