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package jgi;
import java.io.File;
import java.util.ArrayList;
import shared.Tools;
/**
* @author Brian Bushnell
* @date Apr 17, 2013
*
*/
public class AssemblyStatsWrapper {
public static void main(String[] args){
ArrayList<String> alist=new ArrayList<String>();
ArrayList<String> ilist=new ArrayList<String>();
alist.add("");
alist.add("header=t");
alist.add("showspeed=f");
alist.add("addname=t");
alist.add("k=0");
for(String arg : args){
if(!arg.contains("=") && Tools.canRead(arg)){
ilist.add("in="+arg);
}else{
String[] split=arg.split("=");
if(split[0].equalsIgnoreCase("in") || split[0].equalsIgnoreCase("ref")){
if(split.length>1){
if(new File(split[1]).exists()){
ilist.add(arg);
}else{
String[] split2=split[1].split(",");
for(String s : split2){
ilist.add("in="+s);
}
}
}
}else{
alist.add(arg);
}
}
}
String[] args2=alist.toArray(new String[alist.size()]);
for(int i=0; i<ilist.size(); i++){
String s=ilist.get(i);
// System.err.println("Processing "+s);
args2[0]=s;
if(i>0){
args2[1]="header=f";
// AssemblyStats2.reset();
System.gc();
synchronized(AssemblyStatsWrapper.class){
try {
AssemblyStatsWrapper.class.wait(100);
} catch (InterruptedException e) {}
}
Thread.yield();
}
AssemblyStats2 as2=new AssemblyStats2(args2);
if(i>0){
AssemblyStats2.overwrite=false;
AssemblyStats2.append=true;
}
as2.process();
}
}
}
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