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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file://some/path/human_g1k_v37.fasta
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=3,length=2147483647>
##contig=<ID=4,length=2147483647>
##contig=<ID=5,length=2147483647>
##contig=<ID=20,length=2147483647>
##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral allele">
#CHROM POS ID REF ALT QUAL FILTER INFO
1 105 . TAAACCCTA T,TAACCCTA 999 PASS .
2 1 . GGGCGTCTCATAGCTGGAGCAATGGCGAGCGCCTGGACAAGGGAGGGGAAGGGGTTCTTATTACTGACGCGGGTAGCCCCTACTGCTGTGTGGTTCCCCTATTTTTTTTTTTTTCTTTTTGAGACGGAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACAATCTCGGCTCACTGCAAGCTCCACC ACG 999 PASS .
2 101 . A ATT 999 PASS .
2 114 . T TTC,TT 999 PASS .
2 115 . C T 999 PASS AA=C
20 3 . G CT 999 PASS .
20 5 . TG CT 999 PASS .
20 5 . TGGG TAC,TG,TGGGG,AC . PASS .
20 59 . AG . 999 PASS .
20 81 . A C 999 PASS AA=A
20 84 . G T 999 PASS AA=T
20 95 . T A 999 PASS AA=T
20 95 . TCACCG AAAAAA 999 PASS .
20 273 . C CAA,CAAA 999 PASS .
20 273 . C CAAAAAAAAAA 999 PASS .
20 273 . C CAA 999 PASS .
20 275 . A C,G 999 PASS AA=A
3 10 . GTGGAC GTGGACACAC,GTGGACAC,GTGGACACACAC,GTGG,GTGGACACACACAC,ATGGACACACAC 999 PASS .
3 17 . CA C 999 PASS .
4 36 . TC C,TT,TTC 999 PASS .
5 21 . A AAG 999 PASS .
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