1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
|
##fileformat=VCFv4.1
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file:///seq/references/1000Genomes-NCBI37.fasta
##contig=<ID=11,length=135006516>
##contig=<ID=20,length=63025520>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele frequency">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA00001 NA00002 NA00003
11 2343543 . A . 999 . AN=6 GT 0/0 0/0 0/0
11 5464562 . C T 999 . AN=0;AC=0 GT ./. ./. ./.
20 76962 rs6111385 T C 999 . AN=6;AF=0.833333;AC=5 GT 0/1 1/1 1/1
20 126310 . ACC A 999 . AN=6;AF=0.666667;AC=4 GT 0/1 0/1 1/1
20 138125 rs2298108 G T 999 . AN=6;AF=0.666667;AC=4 GT 0/1 0/1 1/1
20 138148 rs2298109 C T 999 . AN=6;AF=0.666667;AC=4 GT 0/1 0/1 1/1
20 271225 . T TTTA,TA 999 . AN=6;AF=0.333333,0.333333;AC=2,2 GT 0/2 0/1 1/2
20 304568 . C T 999 . AN=6;AF=0.666667;AC=4 GT 0|1 0|1 1|1
20 326891 . A AC 999 . AN=4;AF=0.5;AC=2 GT 0|1 0|1 ./.
|