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##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=11,length=135006516>
##contig=<ID=12,length=135006516>
##FILTER=<ID=flt,Description="Test FILTER">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test String in INFO">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test String in FORMAT">
##FORMAT=<ID=FFI,Number=1,Type=Integer,Description="Test Integer in FORMAT">
##FORMAT=<ID=FFF,Number=1,Type=Float,Description="Test Float in FORMAT">
##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AR in FORMAT">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Test Number=G in FORMAT">
##INFO=<ID=OLD_REC,Number=1,Type=String,Description="Original variant. Format: CHR|POS|REF|ALT|USED_ALT_IDX">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT S1 S2 S3 S4
11 101 . G C . . OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|4 GT . 0 0 1
11 101 . GCGT G . . OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|1 GT 1 . . .
11 102 . C T . . OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|3 GT . 0 1 0
11 104 . T A . . OLD_REC=11|101|GCGT|G,GCGA,GTGA,CCGT|2,3 GT . 1 1 0
11 201 . C G . . OLD_REC=11|201|CC|GG,GT|1,2 GT 0 1 1 0
11 202 . C G . . OLD_REC=11|201|CC|GG,GT|1 GT 0 1 . 0
11 202 . C T . . OLD_REC=11|201|CC|GG,GT|2 GT 0 . 1 0
12 101 rs101 G C 199 flt INDEL;AN=4;AC=4;DP=19;ISTR=SomeString;XRF=0,4;XRI=0,4;XRS=000,xx;XAF=4;XAI=444;XAS=zzz;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|4 GT 0/. ./0 0/0 0/1
12 101 rs101 GCGT G 199 flt INDEL;AN=4;AC=1;DP=19;ISTR=SomeString;XRF=0,10;XRI=0,1111;XRS=000,AAA;XAF=10;XAI=1111;XAS=AAA;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|1 GT 0/1 1/. ./. ./.
12 102 rs101 C T 199 flt INDEL;AN=4;AC=3;DP=19;ISTR=SomeString;XRF=0,300000;XRI=0,3333;XRS=000,DDD;XAF=3;XAI=33;XAS=xx;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|3 GT 0/. ./0 0/1 0/0
12 104 rs101 T A 199 flt INDEL;AN=4;AC=2;DP=19;ISTR=SomeString;XRF=0,200;XRI=0,2222;XRS=000,BBB;XAF=200000;XAI=22;XAS=DDD;OLD_REC=12|101|GCGT|G,GCGA,GTGA,CCGT|2,3 GT 0/. ./1 1/1 1/0
12 201 . C G . . OLD_REC=12|201|CC|GG,GT|1,2 GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL 0/0:xx:0:0:1.1:1:a:0,1.1:0,1:a,b:0,1,2 1:yy:11:1.1:1.1:1:a:0,1.1:0,1:a,b:0,2 1/1:zz:22:2.2:1.1:1:a:0,1.1:0,1:a,b:0,1,2 0:.:.:.:.:.:.:.:.:.,.:.
12 202 . C G . . OLD_REC=12|201|CC|GG,GT|1 GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL 0/0:xx:0:0:1.1:1:a:0,1.1:0,1:a,b:0,1,2 1:yy:11:1.1:1.1:1:a:0,1.1:0,1:a,b:0,2 ./.:zz:22:2.2:1.1:1:a:0,1.1:0,1:a,b:0,1,2 0:.:.:.:.:.:.:.:.:.,.:.
12 202 . C T . . OLD_REC=12|201|CC|GG,GT|2 GT:FSTR:FFI:FFF:FAF:FAI:FAS:FRF:FRI:FRS:PL 0/0:xx:0:0:2.2:2:b:0,2.2:0,2:a,c:0,3,5 .:yy:11:1.1:2.2:2:b:0,2.2:0,2:a,c:0,5 1/1:zz:22:2.2:2.2:2:b:0,2.2:0,2:a,c:0,3,5 0:.:.:.:.:.:.:.:.:.,.:.
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