1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17
|
##fileformat=VCFv4.3
##FILTER=<ID=PASS,Description="All filters passed">
##contig=<ID=1,length=135006516>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AD,Number=R,Type=Integer,Description="Allelic Depth">
##INFO=<ID=QS,Number=R,Type=Integer,Description="Allelic Quality Sum">
##FORMAT=<ID=AD,Number=R,Type=Integer,Description="Allelic Depth">
##FORMAT=<ID=QS,Number=R,Type=Integer,Description="Allelic Quality Sum">
##INFO=<ID=OLD_REC,Number=1,Type=String,Description="Original variant. Format: CHR|POS|REF|ALT|USED_ALT_IDX">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample
1 50 . A . . . . . .
1 100 . C G . . OLD_REC=1|100|CC|GG|1 GT 0/1
1 101 . C G . . OLD_REC=1|100|CC|GG|1 GT 0/1
1 110 . C T,<*> . . . GT 0/1
1 200 . A C . . AD=1,3;QS=10,30;OLD_REC=1|200|AAA|AAC,CAC|2 GT:AD:QS 0/1:1,3:10,30
1 202 . A C . . AD=1,5;QS=10,50;OLD_REC=1|200|AAA|AAC,CAC|1,2 GT:AD:QS 1/1:1,5:10,50
1 300 . A . . . . . .
|