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##fileformat=VCFv4.0
##FILTER=<ID=PASS,Description="All filters passed">
##FILTER=<ID=Fail,Description="Test">
##FILTER=<ID=q10,Description="Quality below 10">
##INFO=<ID=XX,Number=1,Type=Integer,Description="Test">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=2,length=62435964>
##contig=<ID=1,length=62435964>
##samtoolsVersion=0.2.0-rc10+htslib-0.2.0-rc10
##samtoolsCommand=samtools mpileup -t INFO/DPR -C50 -pm3 -F0.2 -d10000 -ug -r 1:1-1000000 -b mpileup.2014-07-03//lists/chr1-pooled.list -f human_g1k_v37.fasta
##ALT=<ID=X,Description="Represents allele(s) other than observed.">
##contig=<ID=3,length=62435964>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A
1 100 . GTTT G 1806 q10 XX=11;DP=35 GT:GQ:DP 0/1:409:35
1 110 . C T,G 1792 Fail DP=32 GT:GQ:DP 0/1:245:32
1 110 . CAAA C 1792 Fail DP=32 GT:GQ:DP 0/1:245:32
1 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
1 130 . G T 1016 Fail DP=22 GT:GQ:DP 0/1:212:22
1 130 . GAA GG 1016 Fail DP=22 GT:GQ:DP 0/1:212:22
1 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
1 150 . TAAAA TA,T 246 Fail DP=10 GT:GQ:DP 1/2:12:10
1 160 . TAAAA TA,T 246 Fail DP=10 GT:GQ:DP 1/2:12:10
2 100 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35
2 110 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32
2 120 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
2 130 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
2 140 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
2 150 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10
2 160 . TAAAA TA,TC,T 246 PASS DP=10 GT:GQ:DP 0/2:12:10
3 142 . GTTT G 1806 q10 DP=35 GT:GQ:DP 0/1:409:35
3 152 . CAAA C 1792 PASS DP=32 GT:GQ:DP 0/1:245:32
3 162 . GA G 628 q10 DP=21 GT:GQ:DP 1/1:21:21
3 172 . GAA G 1016 PASS DP=22 GT:GQ:DP 0/1:212:22
3 182 . GT G 727 PASS DP=30 GT:GQ:DP 0/1:150:30
3 192 . TAAAA TA,T 246 PASS DP=10 GT:GQ:DP 1/2:12:10
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