File: consensus8.vcf

package info (click to toggle)
bcftools 1.16-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 20,252 kB
  • sloc: ansic: 60,589; perl: 5,818; python: 587; sh: 333; makefile: 284
file content (24 lines) | stat: -rw-r--r-- 949 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
##fileformat=VCFv4.2
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##reference=file://some/path/human_g1k_v37.fasta
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the variant described in this record">
##INFO=<ID=MinDP,Number=1,Type=Integer,Description="Dummy">
##ALT=<ID=DEL,Description="Deletion">
##contig=<ID=1,assembly=b37,length=249250621>
##contig=<ID=2,assembly=b37,length=249250621>
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA001
1	5	.	C	a	.	PASS	.	GT	0/1
1	5	.	C	t	.	PASS	.	GT	0/1
1	7	.	T	a	.	PASS	.	GT	.
1	10	.	G	a	.	PASS	.	GT	0/1
1	12	.	GACA	ga	.	PASS	.	GT	0/1
1	16	.	T	taaa	.	PASS	.	GT	1/1
1	19	.	A	c	.	PASS	.	GT	0/1
1	61	.	C	a	.	PASS	.	GT	0/1
2	61	.	AGAG	aa	.	PASS	.	GT	0/1
2	119	.	AAA	t	.	PASS	.	GT	0/1
2	179	.	G	gacgtacgt	.	PASS	.	GT	0/1
2	200	.	A	<DEL>	.	PASS	END=210	GT	1/0
2	300	.	A	.	.	PASS	END=310;MinDP=10	GT	0/1
2	320	.	A	<*>	.	PASS	END=330;MinDP=20	GT	0/1
2	481	.	T	c,a	.	PASS	.	GT	0/2