File: filter-missing-floats.vcf

package info (click to toggle)
bcftools 1.16-1
  • links: PTS, VCS
  • area: main
  • in suites: bookworm
  • size: 20,252 kB
  • sloc: ansic: 60,589; perl: 5,818; python: 587; sh: 333; makefile: 284
file content (43 lines) | stat: -rw-r--r-- 1,876 bytes parent folder | download | duplicates (5)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
##fileformat=VCFv4.2
##reference=file:///some/path/1000GenomesPilot-NCBI36.fasta
##contig=<ID=1,length=249250621>
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=A_AF,Number=A,Type=Float,Description="Allele frequency">
##INFO=<ID=B_AF,Number=A,Type=Float,Description="Allele frequency">
##INFO=<ID=C_AF,Number=A,Type=Float,Description="Allele frequency">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
1	201	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00008;C_AF=0.00008
1	202	.	A	T	0	PASS	A_AF=0.00008
1	203	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00008;
1	204	.	A	T	0	PASS	A_AF=0.00008;C_AF=0.00008
1	205	.	A	T	0	PASS	B_AF=0.00008
1	206	.	A	T	0	PASS	B_AF=0.00008;C_AF=0.00008
1	207	.	A	T	0	PASS	C_AF=0.00008
1	301	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00008;C_AF=0.00012
1	302	.	A	T	0	PASS	A_AF=0.00008;
1	303	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00008;
1	304	.	A	T	0	PASS	A_AF=0.00008;C_AF=0.00012
1	305	.	A	T	0	PASS	B_AF=0.00008
1	306	.	A	T	0	PASS	B_AF=0.00008;C_AF=0.00012
1	307	.	A	T	0	PASS	C_AF=0.00012
1	401	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00012;C_AF=0.00008
1	402	.	A	T	0	PASS	A_AF=0.00008;
1	403	.	A	T	0	PASS	A_AF=0.00008;B_AF=0.00012
1	404	.	A	T	0	PASS	A_AF=0.00008;C_AF=0.00008
1	405	.	A	T	0	PASS	B_AF=0.00012
1	406	.	A	T	0	PASS	B_AF=0.00012;C_AF=0.00008
1	407	.	A	T	0	PASS	C_AF=0.00008
1	501	.	A	T	0	PASS	A_AF=0.00012;B_AF=0.00008;C_AF=0.00008
1	502	.	A	T	0	PASS	A_AF=0.00012;
1	503	.	A	T	0	PASS	A_AF=0.00012;B_AF=0.00008
1	504	.	A	T	0	PASS	A_AF=0.00012;C_AF=0.00008
1	505	.	A	T	0	PASS	B_AF=0.00008
1	506	.	A	T	0	PASS	B_AF=0.00008;C_AF=0.00008
1	507	.	A	T	0	PASS	C_AF=0.00008
1	1001	.	A	T	0	PASS	A_AF=0.00012;B_AF=0.00012;C_AF=0.00012
1	1002	.	A	T	0	PASS	A_AF=0.00012;
1	1003	.	A	T	0	PASS	A_AF=0.00012;B_AF=0.00012
1	1004	.	A	T	0	PASS	A_AF=0.00012;C_AF=0.00012
1	1005	.	A	T	0	PASS	B_AF=0.00012
1	1006	.	A	T	0	PASS	B_AF=0.00012;C_AF=0.00012
1	1007	.	A	T	0	PASS	C_AF=0.00012