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##fileformat=VCFv4.2
##reference=file:///some/path/1000GenomesPilot-NCBI36.fasta
##FILTER=<ID=PASS,Description="All filters passed">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=3,length=2147483647>
##contig=<ID=4,length=2147483647>
##contig=<ID=5,length=2147483647>
##contig=<ID=20,length=2147483647>
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT XY00001 XY00002
1 105 . T G,A 999 PASS . GT 1/2 1/2
2 1 . G ACGT 999 PASS . GT 1/0 1/0
2 101 . C A 999 PASS . GT 1/1 1/1
2 114 . TC TTCC,TTC 999 PASS . GT 1/2 1/2
2 115 . T C 999 PASS . GT 0/0 0/0
20 3 . G CT 999 PASS . GT 0/1 0/1
20 3 . GATG GACT 999 PASS . GT 1/0 1/0
20 5 . TGGG TAC,TG,TGGGG,AC . PASS . GT 1/2 1/2
20 59 . AG . 999 PASS . GT 0/0 0/0
20 80 . CACAG CACAT 999 PASS . GT 0/1 0/1
20 81 . A C 999 PASS . GT 0/1 0/1
20 95 . TCACCG ACACCG 999 PASS . GT 0/1 0/1
20 95 . TCACCG AAAAAA 999 PASS . GT 0/1 0/1
20 273 . CAAAAAAAAAAAAAAAAAAAAA CAAAAAAAAAAAAAAAAAAAAAAA,CAAAAAAAAAAAAAAAAAAAAAAAA 999 PASS . GT 1/2 1/2
20 274 . AAAAAAAAA AAAAAAAAAAAAAAAAAAA 999 PASS . GT ./. ./.
20 275 . A C,G 999 PASS . GT 2 2
20 278 . AAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAA 999 PASS . GT ./. ./.
3 10 . GTGGAC GTGGACACAC,GTGGACAC,GTGGACACACAC,GTGG,GTGGACACACACAC,ATGGACACACAC 999 PASS . GT ./. ./.
3 15 . CACA CAC 999 PASS . GT ./. ./.
4 21 . ATTTTTTTTTTTTTTTC ATTTTTTTTTTTTTTC,ATTTTTTTTTTTTTTTT,ATTTTTTTTTTTTTTTTC 999 PASS . GT ./. ./.
5 22 . A AGA 999 PASS . GT ./. ./.
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