File: mpileup.cAls.4.out

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##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##reference=file://grch37.chr20.fa.gz
##contig=<ID=20,length=4200>
##ALT=<ID=*,Description="Represents allele(s) other than observed.">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Raw read depth">
##INFO=<ID=MQ0F,Number=1,Type=Float,Description="Fraction of MQ0 reads (smaller is better)">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="List of Phred-scaled genotype likelihoods">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP4,Number=4,Type=Integer,Description="Number of high-quality ref-forward , ref-reverse, alt-forward and alt-reverse bases">
##INFO=<ID=MQ,Number=1,Type=Integer,Description="Average mapping quality">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	sample
20	69066	.	C	G	59.5765	.	DP=1;MQ0F=0;AC=0;AN=2;DP4=0,1,0,0;MQ=60	GT:PL	0/0:0,3,33
20	69076	.	A	G	54.5765	.	DP=1;MQ0F=0;AC=0;AN=2;DP4=0,1,0,0;MQ=60	GT:PL	0/0:0,3,28
20	69093	.	G	A	.	.	.	GT	.
20	69094	.	G	A	.	.	.	GT	.
20	69408	.	C	T	.	.	.	GT	.