1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35
|
##fileformat=VCFv4.2
##FILTER=<ID=PASS,Description="All filters passed">
##INFO=<ID=INDEL,Number=0,Type=Flag,Description="Indicates that the variant is an INDEL.">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Phred-scaled likelihood">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Depth">
##contig=<ID=1,length=2147483647>
##contig=<ID=2,length=2147483647>
##contig=<ID=20,length=2147483647>
##contig=<ID=21,length=2147483647>
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=XRF,Number=R,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XAF,Number=A,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XGF,Number=G,Type=Float,Description="Test Number=AGR in INFO">
##INFO=<ID=XRI,Number=R,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XAI,Number=A,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XGI,Number=G,Type=Integer,Description="Test Number=AGR in INFO">
##INFO=<ID=XRS,Number=R,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XAS,Number=A,Type=String,Description="Test Number=AGR in INFO">
##INFO=<ID=XGS,Number=G,Type=String,Description="Test Number=AGR in INFO">
##FORMAT=<ID=FRF,Number=R,Type=Float,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAF,Number=A,Type=Float,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FGF,Number=G,Type=Float,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FRI,Number=R,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAI,Number=A,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FGI,Number=G,Type=Integer,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FRS,Number=R,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FAS,Number=A,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FGS,Number=G,Type=String,Description="Test Number=AGR in FORMAT">
##FORMAT=<ID=FSTR,Number=1,Type=String,Description="Test String in FORMAT">
##INFO=<ID=ISTR,Number=1,Type=String,Description="Test String in INFO">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT XY00001 XY00002
1 105 . TAAACCCTAAA TAA,TAACCCTAAA 999 PASS INDEL;AN=4;AC=2,2,7;DP=19;ISTR=SomeString;XRF=1e+06,2e+06,500000,7;XRI=1111,2222,5555,7;XRS=AAA,BBB,DDD,xx;XAF=1e+06,500000,7;XAI=1111,5555,7;XAS=AAA,DDD,xx;XGF=1e+06,2e+06,3e+06,500000,.,9e+09,7;XGI=1111,2222,3333,5555,.,9999,7;XGS=A,B,C,E,.,F,x GT:PL:DP:FRF:FRI:FRS:FAF:FAI:FAS:FGF:FGI:FGS 1/2:1,2,3,4,5,6:1:1e+06,2e+06,500000:1111,2222,5555:AAAA,BBB,CC:1e+06,500000:1111,5555:A,BB:1e+06,2e+06,3e+06,500000,.,9e+09:1111,2222,3333,5555,.,9999:A,BB,CCC,EEEE,.,FFFFF 1/2:1,2,3,4,5,6,7:1:1e+06,2e+06,500000,7:1111,2222,5555,7:AAAA,BBB,CC:1e+06,500000,7:1111,5555,7:A,BB:1e+06,2e+06,3e+06,500000,.,9e+09:1111,2222,3333,5555,.,9999,7:A,BB,CCC,EEEE,.,FFFFF,XX
|